Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326G10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79759-2|CAB02137.1|  255|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF100670-1|AAN73858.1|  420|Caenorhabditis elegans Puf (pumilio/...    28   3.5  
Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    28   4.7  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    27   8.1  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z79759-2|CAB02137.1|  255|Caenorhabditis elegans Hypothetical
           protein ZK858.2 protein.
          Length = 255

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 23/90 (25%), Positives = 39/90 (43%)
 Frame = +1

Query: 241 LLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVVAPGE 420
           LLA P     +P P    +  + L+  T +  SPTD   +  LVT    +   +++ P +
Sbjct: 17  LLATPPVAIRRPLPYPRDIISSPLEVATPVTVSPTDFMPIRELVTTPYHISTPVLITPVD 76

Query: 421 FAACQLEEVRQVGSYKKGTMMAGKNVADIV 510
             +   E VR     +  T  A ++V + V
Sbjct: 77  ARSISREIVRVNRIRRVRTRQASRSVFNSV 106


>AF100670-1|AAN73858.1|  420|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 4 protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 511 PRYQQHSSRPSLSPSCR 461
           PRYQQ +S PS++P+ R
Sbjct: 82  PRYQQRASTPSMTPTAR 98


>Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical
           protein D2085.3 protein.
          Length = 666

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 306 PSKEAHGAMSVTYRSS--SCFEPRHETADSIGQYCCGSRRICSLPTRRSAASWVLQ 467
           P KE H  +++    +    F P HE+       C G+  IC++P    A SW+++
Sbjct: 12  PKKEEHPLVAIVILDAFDQRFAPTHESYP-----CFGTIPICNVPAINFALSWLMR 62


>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
           protein Y111B2A.14 protein.
          Length = 1481

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 204 TPSLDASSALRPFTSRTRFS*MQTGTRRLRAHSGPSKE 317
           TP   +S+ALRP TS T      T T +    S  S E
Sbjct: 822 TPKASSSTALRPSTSSTPSQQQSTSTAKAMTSSSTSAE 859


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
            protein protein.
          Length = 1439

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +3

Query: 180  DGAST--LQQTPSLDASSALRPFTSRT 254
            DGAS+  L Q+PSL++S    P TSRT
Sbjct: 1125 DGASSTRLDQSPSLESSLGSLPDTSRT 1151


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical protein
            C04D8.1 protein.
          Length = 1317

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +3

Query: 180  DGAST--LQQTPSLDASSALRPFTSRT 254
            DGAS+  L Q+PSL++S    P TSRT
Sbjct: 1003 DGASSTRLDQSPSLESSLGSLPDTSRT 1029


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,510,477
Number of Sequences: 27780
Number of extensions: 232210
Number of successful extensions: 567
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)