Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326G09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    27   2.2  
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   5.2  

>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 384 FGTRVFFFFFCLDGWTSSQPTRC 452
           FG R+  F F ++GW  S  +RC
Sbjct: 505 FGERMEGFVFTVNGWVQSYGSRC 527


>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 339 CYLNTIKF-LNLPRAEFGTRVFF-FFFCLDGWT 431
           C + ++ F +NL  A+    V F  FFC+D WT
Sbjct: 84  CIVRSLLFWINLDSADSRISVLFQCFFCIDIWT 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,616,761
Number of Sequences: 5004
Number of extensions: 24121
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)