Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326G09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF025457-10|AAB70972.1|  148|Caenorhabditis elegans Hypothetical...    27   6.2  

>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
 Frame = +3

Query: 285 LQFCC-----CCLYIIFLNSFYDCYLNTIKFLNLPRAEFGTRVFFFFFCL 419
           L +CC        ++I LN FY C        N    +FG  +F F F +
Sbjct: 182 LDYCCHFFSIAISFVITLNYFYYCTFRNWHSRNFKFHKFGVLIFTFLFSI 231


>AF025457-10|AAB70972.1|  148|Caenorhabditis elegans Hypothetical
           protein C08E3.11 protein.
          Length = 148

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 294 CCCCLYIIFLNSFYDCYLNTIKFLNLPRAEFGTRVFFFF 410
           CC C  I +L     C    I  LN P+     +V FFF
Sbjct: 93  CCVCWIIFYLPLNTHCLFFCIFNLNSPKHPLIDKVVFFF 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,106,126
Number of Sequences: 27780
Number of extensions: 140347
Number of successful extensions: 256
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)