Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326G07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    26   3.9  
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    26   3.9  
SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|...    25   6.8  
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce...    25   6.8  
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    25   6.8  
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    25   6.8  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    25   9.0  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   9.0  

>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 114 NYE*KKRKFNNEYFLGFPRFVD 49
           N E KKR FNN+Y    P  +D
Sbjct: 63  NAEQKKRAFNNDYDFDSPEAID 84


>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
 Frame = -2

Query: 355 KVADD-FIVIEAKX---EEKKDEQG-FISRXFVRKYKLPQGSQPNKITSTLSADG-VLKI 194
           KV DD F  +E K    E+KKD    F++   V+  +L    +P  I  +   D  ++K 
Sbjct: 89  KVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELL--GEPVGIVYSRQRDAEIVKA 146

Query: 193 VVPKETAVLKDTAIPVAYE 137
            +PK T VLK     + YE
Sbjct: 147 AIPKATEVLKSKNGSIDYE 165


>SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +1

Query: 121 LASLSPRMPQVSQYLSK--QPFLLAPLFSTHHQ 213
           L     RM Q+   + K  +  +LAP+F  HHQ
Sbjct: 23  LIEFQDRMRQIENTMGKGTKTEMLAPIFQLHHQ 55


>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -2

Query: 370 EQIQVKVADDFIVIEAKXEEKKDEQGFISRXFVRKYKLPQGSQPNKIT-STLSADGVLKI 194
           EQ+Q K+ +    +     E   + G + R F  KY L  GS+P+ +T   ++ D   K 
Sbjct: 116 EQVQ-KLEEKMSSLVVNDPELAQKVGRL-RQFFEKYGLEAGSKPSPLTILKITRDPEFKQ 173

Query: 193 VVPKETAVLKDTAI 152
           +    T + K + I
Sbjct: 174 LAETITEIFKKSGI 187


>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 359 LNLFSGKIFNQ*IDLQSVFLCFHNISVVPWK 451
           LN   GK+ +  ID QS+ +C   + +  WK
Sbjct: 12  LNSSLGKLADHIIDSQSISICKQVVELPEWK 42


>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +2

Query: 365 LFSGKIFNQ*IDLQSVFLCFHNISVVPWKVLEGGPGTQ 478
           L S   +NQ I    V  C   I V   KV+EG  G Q
Sbjct: 47  LSSAGPYNQAIKANGVIYCSGQIPVANGKVIEGTVGDQ 84


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 147 TGIAVSFKTAVSFGTTIFNTPSADSVDVIL 236
           T I + FKT  S+G+TI N       D I+
Sbjct: 237 TAIMMQFKTPPSYGSTIVNIGGIAMKDKII 266


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 198 K*WCQKKRLF*KILRYLWHTRTQRSQIR 115
           K W +  R F  +L YLW T+  R Q +
Sbjct: 237 KSWAEYFRSFSTLLPYLWPTKDYRLQFQ 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,779
Number of Sequences: 5004
Number of extensions: 36419
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)