Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326G05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 31 0.10
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 27 2.2
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 26 3.0
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr... 26 3.9
SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.2
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 6.8
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ... 25 6.8
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 25 6.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.0
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 9.0
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 9.0
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 31.1 bits (67), Expect = 0.10
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 191 SLPASVPTRISRRRFCIPVLPNITIVTLSSDRFDKSQ 301
S+ A +P+ I + IP+L N+ ++ + D+F ++Q
Sbjct: 750 SISAEIPSNIRKANIMIPILQNVQMLFVYHDQFSRAQ 786
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -3
Query: 258 IFGNTGIQNRLREIRVGTEAGSDHERQ*RNRRGPRAECSVCEGTRXGQAARGAVLGAGVP 79
+F I +LRE R G E S+H+ ++RR RA +A G +L + P
Sbjct: 905 LFTPEKIYRKLREFRRGLEGKSNHDHS-KDRRHSRARKPAYADRNQLKAEAGILLASMFP 963
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = -2
Query: 469 SFI--IVIVKLGPIVATPSCPSTSSSML 392
SFI I + L P+VA P+ P+TSS+++
Sbjct: 243 SFIKTIPLSSLPPLVAAPTSPNTSSTLI 270
>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -2
Query: 70 TELVGAQPLHRLAHL 26
T LVGAQPL L HL
Sbjct: 65 TSLVGAQPLKNLTHL 79
>SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 347 SRASRPAAPPGTVRWQH 397
S A++P P G ++WQH
Sbjct: 82 SNATKPQCPKGFLQWQH 98
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 124 PSALTHTTFRSRPPPIPLLP 183
PSAL+ RSRP P+ L P
Sbjct: 564 PSALSPLRIRSRPSPLSLPP 583
>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 268
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 460 IVIVKLGPIVATPSCPSTSSS 398
+V + +GPIV T S PS++SS
Sbjct: 29 VVALLVGPIVQTLSIPSSTSS 49
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +3
Query: 147 IPLSAPADSFTAFRDHFPLPCRPGSLVDDSVSPYYQISQ*LP*VLTGSINHSFTDAISQ* 326
+P + +D F FR +P C ++ V P +S+ V S +
Sbjct: 190 LPTTEDSDLFMTFRSIYP-SCTSAKII---VDPVTGLSRKYGFVRFSSEKEQQHALMHMQ 245
Query: 327 XLVCRGRPVRRDLPPPPGRS 386
+C+GRP+R + P R+
Sbjct: 246 GYLCQGRPLRISVASPKSRA 265
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +2
Query: 200 ASVPTRISRRRFCIPVLPNITIVTLSSDRFDKSQLYRCDITIXF 331
A + +S R + V+P + +LS ++ D+S + D F
Sbjct: 3524 AGIEENLSNLRNLLAVIPTFPVTSLSIEKVDRSLMKSLDFIPKF 3567
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 144 YIPLSAPADSFTAFRDHFPLPCRPGSLVDDSV 239
Y+P P T + +FP R GS V D V
Sbjct: 418 YVPQYYPVYHQTPYTQNFPNMSRSGSQVSDQV 449
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 187 VITSRFRADPDLS*TILYPRIT-KYH 261
V+T + + PDLS +L P +T KYH
Sbjct: 1189 VVTEHWMSLPDLSKRVLIPFLTSKYH 1214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,092
Number of Sequences: 5004
Number of extensions: 30362
Number of successful extensions: 93
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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