Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326G05f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC132837-1|AAI32838.1|  369|Homo sapiens similar to cyclin I pro...    30   4.3  
AK131553-1|BAD18687.1|  369|Homo sapiens protein ( Homo sapiens ...    30   4.3  
BC047567-1|AAH47567.1|  423|Homo sapiens casein kinase 1, gamma ...    29   7.5  
AF049090-1|AAD26526.1|  455|Homo sapiens casein kinase I gamma 3...    29   7.5  
AF049089-1|AAD26525.1|  447|Homo sapiens casein kinase I gamma 3...    29   7.5  
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen...    29   9.9  
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p...    29   9.9  
M20789-1|AAB59373.1|  589|Homo sapiens alpha-1 type I collagen p...    29   9.9  
K03179-1|AAA51847.1|  136|Homo sapiens COL1A1 protein.                 29   9.9  
K03177-1|AAA75385.1|   52|Homo sapiens COL1A1 protein.                 29   9.9  
K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.                 29   9.9  
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha...    29   9.9  
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen...    29   9.9  
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ...    29   9.9  

>BC132837-1|AAI32838.1|  369|Homo sapiens similar to cyclin I
           protein.
          Length = 369

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -3

Query: 159 PRAECSVCEGTRXGQAARGAVLGAGVPFRGRSLSARSRCTASRISAAS 16
           PR+  S C GTR   AA      A VP R R  +A +  TA  + AA+
Sbjct: 49  PRSNRSRCPGTRQPGAASLHAASAAVPVRPRRGTAPAGKTADAVPAAA 96


>AK131553-1|BAD18687.1|  369|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16793 fis, clone TBAES2007481, weakly  similar
           to Cyclin I. ).
          Length = 369

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -3

Query: 159 PRAECSVCEGTRXGQAARGAVLGAGVPFRGRSLSARSRCTASRISAAS 16
           PR+  S C GTR   AA      A VP R R  +A +  TA  + AA+
Sbjct: 49  PRSNRSRCPGTRQPGAASLHAASAAVPVRPRRGTAPAGKTADAVPAAA 96


>BC047567-1|AAH47567.1|  423|Homo sapiens casein kinase 1, gamma 3
           protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 372 PPGRSGGNMEDDVDGQEGVATIGPNFTI 455
           P GRSG N         GV  +GPNF +
Sbjct: 18  PSGRSGHNTRGTGSSSSGVLMVGPNFRV 45


>AF049090-1|AAD26526.1|  455|Homo sapiens casein kinase I gamma 3L
           protein.
          Length = 455

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 372 PPGRSGGNMEDDVDGQEGVATIGPNFTI 455
           P GRSG N         GV  +GPNF +
Sbjct: 18  PSGRSGHNTRGTGSSSSGVLMVGPNFRV 45


>AF049089-1|AAD26525.1|  447|Homo sapiens casein kinase I gamma 3
           protein.
          Length = 447

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 372 PPGRSGGNMEDDVDGQEGVATIGPNFTI 455
           P GRSG N         GV  +GPNF +
Sbjct: 18  PSGRSGHNTRGTGSSSSGVLMVGPNFRV 45


>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
           protein.
          Length = 1464

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 339 RGRPVRRDLPPPPGRSGGNMEDDVDGQEGVA 431
           RG P    LP PPG  GG       G +GVA
Sbjct: 472 RGEPGPTGLPGPPGERGGPGSRGFPGADGVA 502


>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
           protein.
          Length = 1069

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 339 RGRPVRRDLPPPPGRSGGNMEDDVDGQEGVA 431
           RG P    LP PPG  GG       G +GVA
Sbjct: 472 RGEPGPTGLPGPPGERGGPGSRGFPGADGVA 502


>M20789-1|AAB59373.1|  589|Homo sapiens alpha-1 type I collagen
           protein.
          Length = 589

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 339 RGRPVRRDLPPPPGRSGGNMEDDVDGQEGVA 431
           RG P    LP PPG  GG       G +GVA
Sbjct: 472 RGEPGPTGLPGPPGERGGPGSRGFPGADGVA 502


>K03179-1|AAA51847.1|  136|Homo sapiens COL1A1 protein.
          Length = 136

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 339 RGRPVRRDLPPPPGRSGGNMEDDVDGQEGVA 431
           RG P    LP PPG  GG       G +GVA
Sbjct: 1   RGEPGPTGLPGPPGERGGPGSRGFPGADGVA 31


>K03177-1|AAA75385.1|   52|Homo sapiens COL1A1 protein.
          Length = 52

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 339 RGRPVRRDLPPPPGRSGGNMEDDVDGQEGVA 431
           RG P    LP PPG  GG       G +GVA
Sbjct: 1   RGEPGPTGLPGPPGERGGPGSRGFPGADGVA 31


>K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.
          Length = 1040

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 339 RGRPVRRDLPPPPGRSGGNMEDDVDGQEGVA 431
           RG P    LP PPG  GG       G +GVA
Sbjct: 48  RGEPGPTGLPGPPGERGGPGSRGFPGADGVA 78


>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
           protein.
          Length = 1464

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 339 RGRPVRRDLPPPPGRSGGNMEDDVDGQEGVA 431
           RG P    LP PPG  GG       G +GVA
Sbjct: 472 RGEPGPTGLPGPPGERGGPGSRGFPGADGVA 502


>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
           protein.
          Length = 1461

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 339 RGRPVRRDLPPPPGRSGGNMEDDVDGQEGVA 431
           RG P    LP PPG  GG       G +GVA
Sbjct: 469 RGEPGPTGLPGPPGERGGPGSRGFPGADGVA 499


>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
           precursor variant protein.
          Length = 1467

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 339 RGRPVRRDLPPPPGRSGGNMEDDVDGQEGVA 431
           RG P    LP PPG  GG       G +GVA
Sbjct: 475 RGEPGPTGLPGPPGERGGPGSRGFPGADGVA 505


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,144,872
Number of Sequences: 237096
Number of extensions: 1299030
Number of successful extensions: 9340
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9335
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)