Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326G05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical pr...    31   0.50 
Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical pr...    31   0.50 
U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protei...    30   1.2  
U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.3 protein.
          Length = 283

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 342 GRPVRRDLPPPPGRSGGNMEDDVDGQEG 425
           G P R   P PPG +GG  E   DG++G
Sbjct: 230 GHPGRNGPPGPPGDNGGQGEPGKDGEDG 257


>Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.2 protein.
          Length = 283

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 342 GRPVRRDLPPPPGRSGGNMEDDVDGQEG 425
           G P R   P PPG +GG  E   DG++G
Sbjct: 230 GHPGRNGPPGPPGDNGGQGEPGKDGEDG 257


>U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protein
           20 protein.
          Length = 288

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 342 GRPVRRDLPPPPGRSGGNMEDDVDGQEG 425
           G P R   P PPG +G N E   DG++G
Sbjct: 235 GHPGRAGPPGPPGDNGPNGEPGKDGEDG 262


>U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical
           protein C16B8.3 protein.
          Length = 164

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 139 HTTFRSRPPPIPLLPFVITSRFRADPDLS*TILYPRITKY 258
           ++ +  +PPP+P  P+  T+ + ++P  S T  YP+   Y
Sbjct: 91  YSAYNQQPPPLPQQPYQ-TNMYPSNPGYSSTPGYPQQQPY 129


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 345  RPVRRDLPPPPGRSGGNMEDDVDGQEGVATIGPNF 449
            +P  RD PPPP  +    +D+V    G+ T  PNF
Sbjct: 1115 QPTERDAPPPP-PTQTKAQDEVTNLPGL-TFTPNF 1147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,993,633
Number of Sequences: 27780
Number of extensions: 186913
Number of successful extensions: 797
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)