Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326G04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    84   1e-17
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    25   9.0  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 84.2 bits (199), Expect = 1e-17
 Identities = 52/151 (34%), Positives = 66/151 (43%)
 Frame = -3

Query: 519 HQTGSNNPLGLNRNLDKIPFHPFFTFKDXXXXXXXXXXXXXXXXINPYLLGDPDNFTPAN 340
           H  GS+NPLG+  N+D+IP +P++  KD                 NPY   +PD   PA+
Sbjct: 202 HTNGSSNPLGVTANMDRIPMNPYYLIKDLITIFIFLIGINYMAFYNPYGFMEPDCALPAD 261

Query: 339 PLVTPVHIQPE*YFLFAYAILRSIPNKLGGVXXXXXXXXXXXXLPFTFKKKIQGIQFYPI 160
           PL TP+ I PE Y L  YAILR+IPN   GV            LP      I+G  F P 
Sbjct: 262 PLKTPMSIVPEWYLLPFYAILRAIPNFQLGVIAMLLSILVLLLLPLLDFSAIRGNSFNPF 321

Query: 159 NQXXXXXXXXXXXXXXXIGARPVENPYIITG 67
            +               IG    EN +I  G
Sbjct: 322 GKFFFWTFVADFVILAWIGGSHPENVFITIG 352


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 480 NLDKIPFHPFFT 445
           NL+ I FHPFFT
Sbjct: 387 NLESILFHPFFT 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,348,983
Number of Sequences: 5004
Number of extensions: 19096
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)