Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326F12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 33 0.034
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 30 0.24
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 28 0.73
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 28 0.73
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 27 2.2
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 26 3.0
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 3.0
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 5.2
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 25 6.8
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 25 6.8
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 25 9.0
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 32.7 bits (71), Expect = 0.034
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +1
Query: 265 LYPPLLSTVSDDMA--DNAVYNRQIST-ESGWDNPFRPDGDLSREADEIVSLIK 417
L P + TVS ++ + A+YN Q+S+ +S DN F D DLSR +VSL++
Sbjct: 502 LPPKTIRTVSVNLLPEERALYNEQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLR 555
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 29.9 bits (64), Expect = 0.24
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -1
Query: 449 TGGVGVMGLPPLMSETISSASRLKSPSGRNGLSHPLSVLICLLYTALSAISSLT 288
+GG V LPP + E S+ + +K G HP L+ + T A + LT
Sbjct: 211 SGGKNVKALPPTLEEDNSTQNSIKELQESLGEDHPAGALVGVTKTLDQARAVLT 264
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 28.3 bits (60), Expect = 0.73
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +1
Query: 163 FLSSERSKVRVSFYQGARPQCLSPPPTAEQDSYILYPPLLSTVSDDMADNAVYNRQISTE 342
F S R S YQ A LSP T DSY+ P ++SD+M+ ++ ++T
Sbjct: 409 FNYSSRDTAITSIYQFAN--LLSPADTP--DSYLAAPKERLSISDNMSSSSSQTATVNTI 464
Query: 343 SGWDN 357
S + N
Sbjct: 465 SNYLN 469
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 504 IRFSLFLLVFVSRQLWSRDRWSWSDGLAALD 412
I +FL+++V+ +LWSR+ WS+ + +D
Sbjct: 491 ITLPIFLVLYVAHKLWSRN-WSFGKRIEEID 520
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 467 GNCGAATGGVGVMGLPPLMSETISSASRLKSPSGRNGLS-HPLSV 336
G C G G P L + I S + KS SGR LS +P SV
Sbjct: 74 GFCNGTGGSASCTGCPAL-NNRIRSLNASKSQSGRKSLSPNPSSV 117
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 408 AHQGRQAHHSNSTGRGSTVAD 470
AH GR HHSNS ST D
Sbjct: 71 AHLGRFTHHSNSLIHASTKED 91
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 483 LVFVSRQLWSRDRWSWSDGLAALD 412
LV +Q+WS WSW D L+ D
Sbjct: 2066 LVHGIQQIWSAILWSWGDLLSKKD 2089
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 289 VSDDMADNAVYNRQISTESGWDNP 360
V D+ D+ + N STES W +P
Sbjct: 82 VGDNNNDSYIINVPFSTESAWSSP 105
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 420 ALDERDYLVRFTAQVAIRTERIIPSA 343
ALD R +LVRF + +I T + +PS+
Sbjct: 539 ALDIRTHLVRFLNKFSIPTAQRLPSS 564
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 289 VSDDMADNAVYNRQISTESGWDNPFR 366
VS+ DN + NRQ+STE W++ R
Sbjct: 155 VSNLANDNTLLNRQVSTEE-WNSHLR 179
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 132 DSANGALIVNLFLHKAIE*KHRRNYCR 52
D A+ ALI + ++ + KH RN+C+
Sbjct: 227 DMADSALIASGWMRWQAQLKHYRNFCK 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,408
Number of Sequences: 5004
Number of extensions: 40770
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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