Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326F12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82071-1|CAB04917.1|  209|Caenorhabditis elegans Hypothetical pr...    32   0.29 
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    30   1.2  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    30   1.2  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    30   1.2  
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z69302-10|CAA93267.1|  295|Caenorhabditis elegans Hypothetical p...    28   4.7  
Z47074-3|CAA87376.1|  295|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF008590-1|AAB63299.1|  295|Caenorhabditis elegans paraquat resp...    28   4.7  
AC024200-16|AAF36003.1|  511|Caenorhabditis elegans Hypothetical...    28   4.7  
Z49126-1|CAA88938.2|  605|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>Z82071-1|CAB04917.1|  209|Caenorhabditis elegans Hypothetical
           protein W05B5.1 protein.
          Length = 209

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 352 DNPFRPDGDLSREADEIVSLIKGGKPITPTPPVAAPQLPTDE 477
           +NPFRP+  L  E D IV      KP  P+ P +A   PT +
Sbjct: 89  ENPFRPEEILYHEVDPIVEQYL-HKPFPPSRPGSAQNTPTKQ 129


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
 Frame = +1

Query: 229  SPPPTAEQDSYILYPPLLSTVSD---DMADNAVYNRQISTESGWDNPFRPDGDLSREADE 399
            SP PT    +Y++ P   STV     D + N +Y   +  E G        G+    + E
Sbjct: 5590 SPLPTDNNGNYVIVPTDGSTVKSHPTDDSGNTIY--PVVNEDGTPLSTDLSGNFLTNSGE 5647

Query: 400  IVSLIKGGKPITPTPPVAAPQLPTD 474
            IV     GKP+ P        LPTD
Sbjct: 5648 IVDRDDEGKPLGPD----GQTLPTD 5668


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
 Frame = +1

Query: 229  SPPPTAEQDSYILYPPLLSTVSD---DMADNAVYNRQISTESGWDNPFRPDGDLSREADE 399
            SP PT    +Y++ P   STV     D + N +Y   +  E G        G+    + E
Sbjct: 5635 SPLPTDNNGNYVIVPTDGSTVKSHPTDDSGNTIY--PVVNEDGTPLSTDLSGNFLTNSGE 5692

Query: 400  IVSLIKGGKPITPTPPVAAPQLPTD 474
            IV     GKP+ P        LPTD
Sbjct: 5693 IVDRDDEGKPLGPD----GQTLPTD 5713


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
 Frame = +1

Query: 229  SPPPTAEQDSYILYPPLLSTVSD---DMADNAVYNRQISTESGWDNPFRPDGDLSREADE 399
            SP PT    +Y++ P   STV     D + N +Y   +  E G        G+    + E
Sbjct: 5635 SPLPTDNNGNYVIVPTDGSTVKSHPTDDSGNTIY--PVVNEDGTPLSTDLSGNFLTNSGE 5692

Query: 400  IVSLIKGGKPITPTPPVAAPQLPTD 474
            IV     GKP+ P        LPTD
Sbjct: 5693 IVDRDDEGKPLGPD----GQTLPTD 5713


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
           protein T06E4.1 protein.
          Length = 1295

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +1

Query: 226 LSPPPTAEQDSYILYPPLLSTVSD---DMADNAVYNR-QISTE-SGWDNPFRPDGDLSRE 390
           L+PP T+  D+ +  PP  S+  D   ++    VY+   IS + S  D  F  DGD++  
Sbjct: 87  LAPPNTSVDDNSVCEPPRASSAHDVDPNLEQTKVYSEDSISKDCSIADESFATDGDVTLA 146

Query: 391 ADEIVSLIKGGKPITPTPPVAAPQLPTDE 477
            D            TP+ P+ +     DE
Sbjct: 147 NDFFQQATIQDLENTPSTPLRSQTQVGDE 175


>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical
           protein T04G9.1 protein.
          Length = 1610

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +1

Query: 319 YNRQISTESGWDNPFRPDGDLSREADEIVSLIKGGKPITPTPPVAAPQLPTDEHKEEKAE 498
           YNR+ +  +G   P RP  D +R A  +        PI   PP     +P   H+++++ 
Sbjct: 68  YNRRFTQPNGAPYPLRPHSD-TRNAHRVY-------PIPVEPPQRVHSIPPVYHRQKRSY 119

Query: 499 ANNV 510
           A++V
Sbjct: 120 ASSV 123


>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/69 (26%), Positives = 25/69 (36%)
 Frame = +1

Query: 295 DDMADNAVYNRQISTESGWDNPFRPDGDLSREADEIVSLIKGGKPITPTPPVAAPQLPTD 474
           DD   ++  N+  +T    D P   DG   + A    S       +   PPV  P L T 
Sbjct: 236 DDNGTSSFTNKTSTTTPAADEPLNLDGGDPKPATMKESNTTADPVVLTNPPVVVPVLATS 295

Query: 475 EHKEEKAEA 501
           E   +   A
Sbjct: 296 EEPNDTTAA 304


>Z69302-10|CAA93267.1|  295|Caenorhabditis elegans Hypothetical
           protein F40F8.7 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 418 GGKPITPTPPVAAPQLPTDEHKEEKAEANNVN 513
           G  P T +PP   P+LPT +       A+ VN
Sbjct: 9   GSPPATSSPPTTMPKLPTIQDMLNNIGASTVN 40


>Z47074-3|CAA87376.1|  295|Caenorhabditis elegans Hypothetical
           protein F40F8.7 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 418 GGKPITPTPPVAAPQLPTDEHKEEKAEANNVN 513
           G  P T +PP   P+LPT +       A+ VN
Sbjct: 9   GSPPATSSPPTTMPKLPTIQDMLNNIGASTVN 40


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
 Frame = -1

Query: 425 LPPLMSETISSASRLKSPSGRNGLSHPLSVLICLLYTALSAISSLTVDS-RGGYKM*ESC 249
           +P    ET   A +   P     L HP   + C L+T  S     T  S R G      C
Sbjct: 314 VPHSCGETCGGARKFGCPHPCTELCHPGPCIECKLFTTKSCNCGKTKKSVRCGSDQEVMC 373

Query: 248 SAVGGGDRHCGR 213
             V G    CG+
Sbjct: 374 ETVCGKQLSCGQ 385


>AF008590-1|AAB63299.1|  295|Caenorhabditis elegans paraquat
           responsive protein protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 418 GGKPITPTPPVAAPQLPTDEHKEEKAEANNVN 513
           G  P T +PP   P+LPT +       A+ VN
Sbjct: 9   GSPPATSSPPTTMPKLPTIQDMLNNIGASTVN 40


>AC024200-16|AAF36003.1|  511|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.2 protein.
          Length = 511

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 355 NPFRPDGDLSREADEIVSLIKGGK 426
           NP R + D+ R+ DEI S++K  K
Sbjct: 351 NPTRLNADMRRQLDEIYSMLKASK 374


>Z49126-1|CAA88938.2|  605|Caenorhabditis elegans Hypothetical
           protein DH11.1 protein.
          Length = 605

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 245 RSRTLTFYTPPCCPQSATIWRITLCTTD 328
           R   +  Y P    QS  +W ++LCT D
Sbjct: 169 REGQVATYIPQLARQSPNLWAVSLCTVD 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,961,528
Number of Sequences: 27780
Number of extensions: 255883
Number of successful extensions: 836
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)