Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326F12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    27   0.15 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.8  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   7.7  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   7.7  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   7.7  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -3

Query: 513 VNIIRFSLFLLVFVSRQLWSRDRWSWSDGLAALDERDYLVRFTAQVAIRTERIIPSALRT 334
           V+ + F +  L F     W +  W W  G+  L  R Y+   ++ V++ T  I+  ++  
Sbjct: 77  VSDLLFLILGLPFELSVFWQQYPWQWGLGICKL--RAYVSETSSYVSVLT--IVAFSIER 132

Query: 333 NLSVVHSVIRH 301
            L++ H  +RH
Sbjct: 133 YLAIYHP-LRH 142


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -1

Query: 311 LSAISSLTVDSRGGYKM*ESCSAVGGGDRHCGRAPW*NDTRTFERSELKNAQSQK 147
           LSA  S     +G        + V GG +  G+     D +  + S+ +N +SQK
Sbjct: 48  LSARPSFKTFDKGPKNYTTPVNFVAGGIQQAGKPKEETDDKDDDESDNENIKSQK 102


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 433 TPTPPVAAPQLPTDE 477
           +P    A PQLPT+E
Sbjct: 447 SPATTAAPPQLPTEE 461


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 446 GGVGVMGLPP 417
           GG+GV+ LPP
Sbjct: 96  GGIGVLRLPP 105


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 292 SDDMADNAVYNRQISTESGWDNP 360
           +D   D  V+N Q+ + +G+ NP
Sbjct: 177 TDGKHDYRVWNHQLISYAGYKNP 199


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 266 YTPPCCPQSATIWRIT 313
           + P CCP    ++ IT
Sbjct: 352 FCPDCCPSDRMVYFIT 367


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 266 YTPPCCPQSATIWRIT 313
           + P CCP    ++ IT
Sbjct: 352 FCPDCCPSDRMVYFIT 367


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 266 YTPPCCPQSATIWRIT 313
           + P CCP    ++ IT
Sbjct: 352 FCPDCCPSDRMVYFIT 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,470
Number of Sequences: 438
Number of extensions: 2873
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)