Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326F08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 AIKRNPDDSKLYSNRAACYTKLAAFDLGLKDCEQCC 497
           A+  NPD  +LY +  + Y KL    +   D  + C
Sbjct: 22  AVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVC 57


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 AIKRNPDDSKLYSNRAACYTKLAAFDLGLKDCEQCC 497
           A+  NPD  +LY +  + Y KL    +   D  + C
Sbjct: 22  AVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVC 57


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 402 NPDDSKLYSNRAACYTKL 455
           NPD  +LY +  + Y KL
Sbjct: 22  NPDAKRLYDDLLSNYNKL 39


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 315 EQEKELGNEYFKKGDYSTAVKHYTEAIKR 401
           E EK +  +  ++G+Y  AV H   A  +
Sbjct: 212 EAEKRVECKMEQQGNYENAVSHICNATNK 240


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 315 EQEKELGNEYFKKGDYSTAVKHYTEAIKR 401
           E EK +  +  ++G+Y  AV H   A  +
Sbjct: 212 EAEKRVECKMEQQGNYENAVSHICNATNK 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,048
Number of Sequences: 438
Number of extensions: 2225
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)