Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326F07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 1.3
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 27 2.2
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 26 3.0
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 26 3.0
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 26 3.9
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 25 5.2
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 25 5.2
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo... 25 6.8
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 6.8
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 25 9.0
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 25 9.0
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 25 9.0
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 27.5 bits (58), Expect = 1.3
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Frame = +1
Query: 109 TSDNDVQKKATEYVKSNQNDDELGYNQFMSFMKRIXSGEMKFGEDIDXNQA--KLSKDEI 282
+ +ND+ K+A + +NQND S ++ G+ D N + ++ E
Sbjct: 802 SEENDLGKEAVDEANNNQNDVLESVVVEQSTTTDDCENKVYEGQMNDKNSSLDMVNACEG 861
Query: 283 IDEMAXKYKDEWDKLSDVTD--YWNSEVAHGIP-NEYNFTEGNVMLENKSALEIGKEKLK 453
I++ A + ++ DK++++ D N +++ I E N + V EN S L+ E+ +
Sbjct: 862 INQTAIGFVEKPDKVTELIDEAEENIDISQDISMTETNAVDDEVQAEN-SILQDEVEETR 920
Query: 454 LXDI 465
DI
Sbjct: 921 QDDI 924
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 133 KATEYVKSNQNDDELGYNQF-MSFMKRIXSGEMKFGEDIDXNQAKLSKDEI 282
+ E + QNDD GY+Q+ + F K ++ E I+ N+ D +
Sbjct: 216 ETVEISEKEQNDDPAGYSQYLLEFKKSKCQKKVPTLESIEENEGTEPHDNL 266
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 3.0
Identities = 21/89 (23%), Positives = 38/89 (42%)
Frame = +1
Query: 37 TRIGHSQSLSMVPKTLVQNYGAMTTSDNDVQKKATEYVKSNQNDDELGYNQFMSFMKRIX 216
T++ S+ L V+ + TT N V K E +S + E +S ++
Sbjct: 46 TKVSKSEPLEDKGNAEVKEFKE-TTKSNGV-KPEVEITESTKIQKESNTEPCISTGGKVE 103
Query: 217 SGEMKFGEDIDXNQAKLSKDEIIDEMAXK 303
E+K +D+D N+ ++ + E A K
Sbjct: 104 EKELKVNKDVDENEGHVAVETGKKESAAK 132
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 217 SGEMKFGEDIDXNQAKLSKDEIIDEMAXKYKDEWDKLSDVTDYWNSEVAHG-IPNEYNF- 390
+G + + + +AKLS + ++ + K+SD+T Y ++VA+ + ++Y
Sbjct: 46 TGTLNSNKTTEGEEAKLSIYDSSHSISKSQLESVKKISDITGYNEAQVAYVLLVHQYELN 105
Query: 391 TEGNVMLENKSAL 429
T+ L+N S L
Sbjct: 106 TQYFSQLDNDSVL 118
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 37 TRIGHSQSLSMVPKTLVQNYGAMTTSDNDVQKKATEYVKSNQNDDELGYNQFMS 198
T I H+ +L V + + + G +TTS + + TE++ S + E + +S
Sbjct: 492 TNIMHNFNLEFVTLSYLHSKGIITTSQLESLRNNTEWISSVAENGEKTEEELIS 545
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 265 LSKDEIIDEMAXKYKDEWD 321
LSKD I++E++ D+WD
Sbjct: 897 LSKDAIVEEVSDDGADDWD 915
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -2
Query: 124 HHC-QKLSLLHNFALKFLEPLKEI 56
H C + +HNF + +EPL+E+
Sbjct: 307 HTCLASIDFMHNFVIAVIEPLQEL 330
>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 76 KTLVQNYGAMTTSDNDVQKKATEYVKSNQNDDE 174
K VQ Y + D D+Q +T Y ++ N+D+
Sbjct: 48 KPSVQEYDYLVPLDEDMQGLSTTYHQATINEDD 80
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/87 (17%), Positives = 39/87 (44%)
Frame = +1
Query: 112 SDNDVQKKATEYVKSNQNDDELGYNQFMSFMKRIXSGEMKFGEDIDXNQAKLSKDEIIDE 291
SD D + + K+N++ + N+ FM++ + E D N+ + + +D
Sbjct: 163 SDEDEDSVSNDKSKNNESLKKSSKNEIPGFMRQRGRFFHEANEKSDSNRKRKRQAYELDS 222
Query: 292 MAXKYKDEWDKLSDVTDYWNSEVAHGI 372
+ + ++ +V+ ++ ++ H I
Sbjct: 223 QSCPWHRQYKVEREVSRIFHQDILHFI 249
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 112 SDNDVQKKATEYVKSNQNDDE-LGYNQ 189
SD D KK ++ KS +DD L YN+
Sbjct: 74 SDKDSSKKYSDSAKSTNSDDHLLSYNR 100
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +1
Query: 88 QNYGAMTTSDNDVQKKATEYVKSNQNDDELGY 183
Q+YG +T++ N ++ +A + +ND + G+
Sbjct: 375 QSYGEITSASNCLEYQARRLLTRYRNDKDSGF 406
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 226 MKFGEDIDXNQAKLSKDE-IIDEMAXKYKDEWDKLSDVTDYWNSE 357
M FG++++ N AKL+K + I + Y+ + D W +E
Sbjct: 169 MLFGKELEKNNAKLNKTQNAITASSSDYQSAVAAVRDSYARWTNE 213
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -2
Query: 388 NYIH*EYHGQPLNSNNQ 338
+++ +YHGQ LN++NQ
Sbjct: 66 SHVDTDYHGQALNTDNQ 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.128 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,815,615
Number of Sequences: 5004
Number of extensions: 32835
Number of successful extensions: 97
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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