Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326F06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    29   0.42 
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    26   3.9  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    25   6.8  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    25   9.0  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    25   9.0  

>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 403 WGHHPNSENNCRRSN*KGKRLSIPGWS 483
           W  H N+ N+ +R     K L +PGW+
Sbjct: 306 WNEHGNASNDDKRDVYDAKTLQLPGWA 332


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 93  FLLPLNNKIIFGDIFPKINRNRPLFDLFIC 4
           F+ P ++   +  I P +N + P F  FIC
Sbjct: 206 FVAPCSHSYHYKCIRPTLNESHPYFSCFIC 235


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 515 HPNHILKWHHQLQPGIESLFP 453
           HP H+   H  L+P +++++P
Sbjct: 174 HPYHVNNTHQYLKPYVQNVYP 194


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 323 HKLLYKSIHNLCFAFPHSILSSPVCIVPYIHPH 225
           HK L +SIHN+  ++      +   ++P  H H
Sbjct: 183 HKNLCRSIHNITTSYRLDPRDTSYVVMPLFHVH 215


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 121 MISQKVFSRLPFTTE*QDNFWRHLPENQQEQAF 23
           +IS  + S+ PF      N ++HL  N+ EQ +
Sbjct: 392 LISASLTSKKPFQKTDAVNLFKHLDANKVEQVY 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,531
Number of Sequences: 5004
Number of extensions: 40431
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)