Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326F06f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74031-14|CAD66220.1| 187|Caenorhabditis elegans Hypothetical p... 134 4e-32
AF024501-2|AAB70367.2| 334|Caenorhabditis elegans Serpentine re... 31 0.38
Z92782-12|CAH60765.1| 328|Caenorhabditis elegans Hypothetical p... 30 1.2
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ... 29 2.0
Z49966-5|CAA90245.1| 445|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z99288-7|CAB63421.1| 362|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z71258-5|CAA95784.2| 452|Caenorhabditis elegans Hypothetical pr... 28 4.7
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 4.7
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 4.7
U27312-12|AAA68255.1| 451|Caenorhabditis elegans Hypothetical p... 27 6.2
AL132860-1|CAB60513.2| 616|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z74031-14|CAD66220.1| 187|Caenorhabditis elegans Hypothetical
protein F32D8.13 protein.
Length = 187
Score = 134 bits (324), Expect = 4e-32
Identities = 67/155 (43%), Positives = 91/155 (58%), Gaps = 3/155 (1%)
Frame = +2
Query: 65 IILLFSGKRKSGKDFLTDHLRHILADK---CEIIKISQPIKTHWAXXXXXXXXXXXSEGE 235
I++ SGKRKSGKD+ T+ +R +L K + IS +K +A ++G
Sbjct: 3 IVIAISGKRKSGKDYCTNLIREVLVQKRFDVSVAGISHSLKMEFAKKHGLKYEELLTDGP 62
Query: 236 YKEQYRLEMIKWSEEMRNKDYGCFCKAACENAAIKPVWIVSDIRRKTDIRWFKETYGDII 415
YKE YR +MI+W EE R KD G FC+AA + + I+SD RR+TD +F Y +
Sbjct: 63 YKELYRKDMIQWGEEARCKDSGLFCRAAISSTMDSDIVIISDCRRRTDYEYFSANYRTV- 121
Query: 416 RTVRITADDRTRKERGFQFQVGVDDATSECDLDDY 520
T+RI + RK+RG+QF GVDDA SEC LDDY
Sbjct: 122 -TIRIETSEEDRKQRGYQFVEGVDDAESECGLDDY 155
>AF024501-2|AAB70367.2| 334|Caenorhabditis elegans Serpentine
receptor, class i protein63 protein.
Length = 334
Score = 31.5 bits (68), Expect = 0.38
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 283 HFLTPFYHLQSVLFLIFTLTEQFVQIQIFLFSPMSLDRLRYFNY-FTLIC 137
H+L +YH+ V+ LIF + F I + LF +D RYF F L C
Sbjct: 10 HWLITYYHVIGVISLIF---DSF-SIYLILFKSSKIDNFRYFLLNFQLAC 55
>Z92782-12|CAH60765.1| 328|Caenorhabditis elegans Hypothetical
protein F14F8.13 protein.
Length = 328
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = -2
Query: 328 IFTSCFTKASIIFVSHFLTPFYHLQSVLFLIFTLTEQFVQIQIFLFSPMSLDRLRYFNYF 149
IF CF+ I ++ H L +H+ +LFL+ + I FLF + +Y +F
Sbjct: 99 IFIYCFSFFIIFYILHVLQQTFHV--ILFLL-AILNSLKYIFSFLFLNIQSSVHKYLPHF 155
Query: 148 TL 143
TL
Sbjct: 156 TL 157
>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
protein F52C12.4 protein.
Length = 1635
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 35 LLIFGKMSPKIILLFSGKRKSGKDFLTDHLRHILADK 145
LL+FGK S K I + + K +L + +H+ D+
Sbjct: 747 LLVFGKFSEKYIFFITKTSVNSKKWLKNRRKHVFCDE 783
>Z49966-5|CAA90245.1| 445|Caenorhabditis elegans Hypothetical
protein F35C11.5 protein.
Length = 445
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 355 YNPHRFNGSIFTSCFTKASIIFVSHFLTPFYHLQSVLFLIFTLT 224
Y P++F SIF C + + FV FL FY + LF + L+
Sbjct: 40 YKPNKFISSIFVCCNSFLLLNFVESFL--FYKKEIRLFFLNNLS 81
>Z99288-7|CAB63421.1| 362|Caenorhabditis elegans Hypothetical
protein ZK262.8 protein.
Length = 362
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 313 FTKASIIFVSHFLTPFYHLQSVLFLIF 233
F + +FV HFLTPF S LF+IF
Sbjct: 10 FLGLAYVFV-HFLTPFDDFPSFLFVIF 35
>Z71258-5|CAA95784.2| 452|Caenorhabditis elegans Hypothetical
protein C01H6.6 protein.
Length = 452
Score = 27.9 bits (59), Expect = 4.7
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = -2
Query: 328 IFTSCFTKASIIFVSHFLTPFYHLQSVLF--LIFT-LTEQFVQI---QIFLFSPMSL-DR 170
IF +CF SI + ++ FY +F LI T L F +I IF + +++ R
Sbjct: 162 IFGNCFCNISITLLMNYFAEFYGFGGFIFVELISTALLLIFTEILPSLIFTKNALAIASR 221
Query: 169 LRYFNYFTL 143
L+YF FT+
Sbjct: 222 LQYFVIFTM 230
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +2
Query: 293 DYGCFCKAACENAAIKPVWIVSDIRRKTDIRWFKETYGDIIRTVRITADDRTRK--ERGF 466
D KA C N + K + + + K D+ K T ++RT R A R +
Sbjct: 12549 DAAALLKAVCGNTSPKNSEMPAHLTTKRDVLAQKFTTAPMLRTTRAVAGGLCNDGIRRPY 12608
Query: 467 QFQVGVDDATSECDLDDY 520
F + V D TS D++
Sbjct: 12609 HFNILV-DITSRASADEF 12625
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +2
Query: 293 DYGCFCKAACENAAIKPVWIVSDIRRKTDIRWFKETYGDIIRTVRITADDRTRK--ERGF 466
D KA C N + K + + + K D+ K T ++RT R A R +
Sbjct: 12549 DAAALLKAVCGNTSPKNSEMPAHLTTKRDVLAQKFTTAPMLRTTRAVAGGLCNDGIRRPY 12608
Query: 467 QFQVGVDDATSECDLDDY 520
F + V D TS D++
Sbjct: 12609 HFNILV-DITSRASADEF 12625
>U27312-12|AAA68255.1| 451|Caenorhabditis elegans Hypothetical
protein F26A1.13 protein.
Length = 451
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = -2
Query: 331 SIFTSCFTKASIIFVSHFLTPFYHLQSVLFLIFTLTEQFVQIQIFLFSPMSLDRLRYFNY 152
S+ F+K II + H+L + L++ L E+F++ +I + + LD +
Sbjct: 93 SLLRHVFSKMDIIELRHYLQVL-GFEKTFNLMYNLGEEFIEGEIPVDERILLDEIEALES 151
Query: 151 FTL 143
FT+
Sbjct: 152 FTV 154
>AL132860-1|CAB60513.2| 616|Caenorhabditis elegans Hypothetical
protein Y56A3A.2 protein.
Length = 616
Score = 27.1 bits (57), Expect = 8.1
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Frame = -2
Query: 331 SIFTSCFTKASIIFVSHF-LTPFYHLQSVLFL-------IFTLTEQFVQIQIFLFSPMSL 176
S FT FT ASI ++ HF LT Y L L ++ L QF+ + S +S+
Sbjct: 525 SSFTPRFTFASISWLEHFELTAKYLFTLSLALGLFNAMPVYALDGQFIVHTLLKSSGLSV 584
Query: 175 DRLRYFNYFTL 143
R F Y L
Sbjct: 585 RRRELFQYLIL 595
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,378,095
Number of Sequences: 27780
Number of extensions: 221349
Number of successful extensions: 540
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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