Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326F05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 151 5e-38
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 68 1e-12
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 44 2e-05
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 33 0.034
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 31 0.14
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 29 0.56
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 27 1.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 1.7
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 3.0
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 26 3.9
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.2
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 5.2
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 5.2
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 5.2
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 25 5.2
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 25 5.2
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 6.8
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 25 6.8
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 25 6.8
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 25 9.0
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 25 9.0
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 9.0
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 25 9.0
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 151 bits (367), Expect = 5e-38
Identities = 72/100 (72%), Positives = 87/100 (87%)
Frame = +3
Query: 222 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 401
E DLY ++K L+R LE L++QE +IK++ ++LK+E + AQEEVKRIQSVPLVIGQFLEA
Sbjct: 5 EEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEA 64
Query: 402 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKH 521
+DQNT IVGSTTGSNY VRILST+DRELLKPSASVAL +H
Sbjct: 65 IDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRH 104
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 67.7 bits (158), Expect = 1e-12
Identities = 35/91 (38%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Frame = +3
Query: 252 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSV---PLVIGQFLEAVDQNTGI 422
K+QR+ + L ++EEY+++++R LK + QEE R+ + P+ +G E +D + I
Sbjct: 71 KMQRIHDHLLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAI 129
Query: 423 VGSTTGSNYYVRILSTIDRELLKPSASVALH 515
V ST G YYV I+S +D+++L+P SV LH
Sbjct: 130 V-STAGPEYYVSIMSFVDKDMLEPGCSVLLH 159
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 43.6 bits (98), Expect = 2e-05
Identities = 25/97 (25%), Positives = 49/97 (50%)
Frame = +3
Query: 222 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 401
E + KYK + + + ++ R+L K+Y ++++K +QSV +IG+ L+
Sbjct: 3 ERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQ 62
Query: 402 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVAL 512
+D IV +++G Y V + +D+ L V+L
Sbjct: 63 LDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSL 99
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 32.7 bits (71), Expect = 0.034
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -1
Query: 434 GAANYACILINCLK-KLSNDKRNRLYALYFFLCMQIFFLQVSLFILNVLFLY 282
G Y C+++ + ++N +N+ A FF C+ + F Q++L+ +F Y
Sbjct: 182 GHFQYNCVMLGLVMYAIANLLKNQYVAATFFFCLALTFKQMALYFAPPIFFY 233
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 30.7 bits (66), Expect = 0.14
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 303 DEQRN-LKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDR 479
+ QRN L +EE++ +Q +G+ ++ + +N +V Y V I ID
Sbjct: 42 EAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDI 101
Query: 480 ELLKPSASVAL 512
+ +KP+ VAL
Sbjct: 102 KEIKPNIRVAL 112
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 28.7 bits (61), Expect = 0.56
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 204 QSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKD--EQRNLKKEYLHAQEEVKRI 362
QSF E E E TK+K L R LE E +K E +E L ++E RI
Sbjct: 36 QSFREKELEGSQTKFKVLSRKLEISTQAMESLKQTAESSQHAEEILSREKEKFRI 90
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -2
Query: 355 FTSSCACKYSFFKFRCSSLMYSSCTSKNSNILW 257
F C S +F C ++ TSK N+LW
Sbjct: 313 FPEPSFCSASKIRFNCDETYAATITSKYPNVLW 345
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 1.7
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 153 EKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 332
EK+ + K L A + E+E L + Q+ LE +E K E++ LK+E
Sbjct: 593 EKEKKRDKKKQLKLAKEEERQRREAERLAEQ--AAQKALEAKRQEEARKKREEQRLKREQ 650
Query: 333 LHAQEEVKR 359
Q+E++R
Sbjct: 651 EKKQQELER 659
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 321 KKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 422
K ++ A E+ + VPL +F + VDQN G+
Sbjct: 51 KSKHSEAVVEILKSAKVPLKNKEFSDLVDQNIGV 84
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 365 LYALYFFLCMQIFFLQVSLFILNVLFL 285
+++L+FFLCM+ FF +++ LFL
Sbjct: 360 IFSLFFFLCMRNFFPGFTIY-FPALFL 385
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 351 VKRIQSVPLVIGQFLEAVDQN 413
+K+ +SVP + GQF+E V+ N
Sbjct: 193 LKKSKSVPRLRGQFMEPVEHN 213
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = +3
Query: 147 LPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKK 326
L +K + +TD+ +S +E S+++ TK + + + +K E+ L +
Sbjct: 317 LQDKLELLTDAYNREKRRARSLEERMSKEMLTKLGESNVDDGMAASRYDTVKREKERLSE 376
Query: 327 EYLHAQEEVKRIQSV 371
QE+ + IQSV
Sbjct: 377 HLKSLQEQYEHIQSV 391
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 228 EDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 368
E+ + QR +E QEE IK+E+ ++E +EEV +S
Sbjct: 333 EEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEE--EEEEEVPNYES 377
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +2
Query: 35 SSTTLCLCVRHISDSQIIIR*YT 103
+ T+ C RH+ SQ++I+ Y+
Sbjct: 93 NKTSAVFCKRHVGSSQVVIKIYS 115
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 345 EEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHK 518
EE Q P +GQ+ + + Q I Y++RI+ ++LK S + +HK
Sbjct: 212 EENLDFQESPHYLGQYKKLLSQAMDIF-----KPYFIRIIKQTTDQVLKDSKKMDVHK 264
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 365 LYALYFFLCMQIFFLQVSLFILNVL 291
LYAL + IF L VSLF++N++
Sbjct: 224 LYALGYGRLFGIFVLCVSLFLVNII 248
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.0 bits (52), Expect = 6.8
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +3
Query: 222 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 401
ES+ TK+ E +EV ++Y++ E+ EYL QE + V V+ F A
Sbjct: 378 ESQSKTTKHSTSLPSTEPVEVDKQYMESEKIPTIDEYL--QEYSNEDEIVLQVLESFPAA 435
Query: 402 VDQNTGIVGSTTGSNYYVRIL--STIDREL 485
V +T + +T + Y R + S I R L
Sbjct: 436 VSFST--ITNTIQAKYSNRKIKNSNITRSL 463
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 282 VQEEYIKDEQRNLKKEYLHAQEEVK 356
+QE+ KDEQR LKK L +E +K
Sbjct: 41 LQEKQQKDEQRELKKRKLE-EERLK 64
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 246 YKKLQRMLEFLEVQEEYIKDEQRNLKKEYLH 338
Y+++QR+LE LE++E D L+ Y+H
Sbjct: 95 YQQIQRLLEKLEIKEGNYGDGYA-LQPSYIH 124
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +3
Query: 222 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRI 362
E D+ + +K + L+ + E ++D RN+ E + +++E+K +
Sbjct: 124 EHLDIKKRLEKSDETVCKLKEENENLQDMLRNVGNELVESRDEIKEL 170
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +3
Query: 126 MEEIGIILPEKDDQVTDSKGLAFAGPQSFDEL----ESEDLYTKYKKLQRMLEFLEVQEE 293
M+ I + LP + S+ L + + +EL ESE + KKL + ++ Q+
Sbjct: 1 MQSIDLRLPSTSANHSISESLEHSKSE-LNELSNVSESESYFDITKKLHALSTVVQRQQR 59
Query: 294 YIKDEQRNLKKEYLHAQE 347
I +++R+L + H +E
Sbjct: 60 EIDNQKRDLCTKTKHIEE 77
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +3
Query: 225 SEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKE 329
+EDL + + + +++LE + E + + NL++E
Sbjct: 575 NEDLLIELQGKEEKIQYLETENEEVLQKYENLQEE 609
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 252 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE 350
KL+ ++ F++ EE+ KDE+ K++ +EE
Sbjct: 422 KLEDIIIFVDPFEEWKKDEREKEKRKRQEEEEE 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,033
Number of Sequences: 5004
Number of extensions: 40919
Number of successful extensions: 131
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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