Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326F03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   5.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.8  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 242 VELNYLMTFVVYFVRSLINFGLRFRT*SDNVNDE*FFFYLAVLI*LFL 385
           + L Y++ FV  FV ++I   + +R  S       + F LAV   LFL
Sbjct: 36  ITLTYVVIFVTGFVGNIITCIVIWRNPSMQTPTNYYLFNLAVSDLLFL 83


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 168 NEQHYI-QLTILNNIVIKRKKKLNN 97
           N   YI QLT LNN V +++ +L N
Sbjct: 90  NSVVYIEQLTKLNNAVEEKRPELTN 114


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 508 KRRPVNCNTTHYRANWVPGP 449
           K++P +C+T  YR   V  P
Sbjct: 565 KKQPSDCDTLEYRNGEVTTP 584


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 168 NEQHYI-QLTILNNIVIKRKKKLNN 97
           N   YI QLT LNN V +++ +L N
Sbjct: 212 NSVVYIEQLTKLNNAVEEKRPELTN 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,939
Number of Sequences: 438
Number of extensions: 2421
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)