Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326F02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   3.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   3.9  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   3.9  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    25   5.2  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   5.2  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   6.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.8  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    25   9.0  

>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 421 VVHHKLGETPEFNVSVRK 474
           V HH+L + PEF  SVRK
Sbjct: 227 VNHHRLFQIPEFQDSVRK 244


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +3

Query: 252  PQPSEATPTVAPXSXXEQAPSSTETPPXP 338
            P PSEA P   P       P  +  PP P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220



 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 252  PQPSEATPTVAPXSXXEQAPSSTETPPXPQ 341
            P PS   P +   S     P  T TPP P+
Sbjct: 1025 PLPSADAPPIPVPSTAPPVPIPTSTPPVPK 1054


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 258 PSEATPTVAPXSXXEQAPSSTET 326
           P+EA P   P S  E+AP+S  T
Sbjct: 323 PAEAKPEPVPASAAERAPTSEST 345


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/55 (29%), Positives = 20/55 (36%)
 Frame = +3

Query: 168 FRFXSKTHSSMXTSQTDNGFVPPXETRDPQPSEATPTVAPXSXXEQAPSSTETPP 332
           F   S T SS    Q   G VP     D  PS+   +         +PS  + PP
Sbjct: 575 FNVPSFTVSSSDQVQKKKGNVPNAIETDSSPSDTISSSPTVRAVNLSPSKNQKPP 629


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 225 FVPPXETRDPQPSEATPTVAPXSXXEQAPSSTETPP 332
           FV   E   P+  + +P V+P +  +Q PS   T P
Sbjct: 84  FVFATENAVPRELQTSPIVSPTTSPKQTPSINVTEP 119


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 186 THSSMXTSQTDNGFVPPXETRDPQPSEATPTVA 284
           +H S+ T+    G+ P    RDPQ     P V+
Sbjct: 691 SHGSLNTAHAGMGYGPRSMMRDPQNLSNVPPVS 723


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 30/110 (27%), Positives = 37/110 (33%)
 Frame = +3

Query: 30  SCGTGY*ADPAPG*VSDKXITPLLRXIRXWSRXRHSPYIXQXSXRHFRFXSKTHSSMXTS 209
           SC T     P  G  S    TP+   +   S    S  I   S       S    +  TS
Sbjct: 114 SCTTSTSIPPTGG--SSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTS 171

Query: 210 QTDNGFVPPXETRDPQPSEATPTVAPXSXXEQAPSSTETPPXPQGGLKSD 359
            T +  +PP        +  TPTV P S      SST  P  P     +D
Sbjct: 172 CTTSTSIPPTGGSSSLSTPITPTVPPTS-----TSSTSIPIPPTSTSSTD 216


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 204 TSQTDNGFVPPXETRDPQPSEATPTVAPXSXXEQAPSS 317
           +++   GF      R+ Q SEATP V P +    + S+
Sbjct: 94  SNENSTGFFSNLFGREKQNSEATPAVQPPATCPMSNSN 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,002
Number of Sequences: 5004
Number of extensions: 26871
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)