Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326F02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AL132948-10|CAC51066.1|  366|Caenorhabditis elegans Hypothetical...    29   1.5  
U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protei...    29   2.0  
U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protei...    29   2.0  
Z99281-31|CAI79273.1|  160|Caenorhabditis elegans Hypothetical p...    28   3.5  
Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ...    27   6.2  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical
           protein H06A10.2 protein.
          Length = 305

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +3

Query: 231 PPXETRDPQPSEATPTVAPXSXXEQAPSSTETPPXPQG 344
           PP     P P  A+PT AP +     P      P P G
Sbjct: 230 PPGPAGPPGPDGASPTAAPGAAGPPGPPGPAGAPGPDG 267


>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical
           protein F54B11.2 protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +3

Query: 231 PPXETRDPQPSEATPTVAPXSXXEQAPSSTETPPXPQG 344
           PP     P P  A+PT AP +     P      P P G
Sbjct: 229 PPGPAGPPGPDGASPTAAPGAAGPPGPPGPAGAPGPDG 266


>AL132948-10|CAC51066.1|  366|Caenorhabditis elegans Hypothetical
           protein Y39B6A.11 protein.
          Length = 366

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 231 PPXETRDPQP-SEATPTVAPXSXXEQAPSSTETPP 332
           PP +T  P    EA P +AP +     P+ST+ PP
Sbjct: 236 PPTQTVVPPVLQEAPPVIAPPTEPVAPPTSTQAPP 270


>U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protein
           15, isoform a protein.
          Length = 780

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 228 VPPXETRDPQPSEATPTVAPXSXXEQAPSSTETPPXPQGGL 350
           VPP    DPQP+ A     P +      S+T + P P GGL
Sbjct: 111 VPP----DPQPTSAQARNPPVTVATTQASTTPSAPNPPGGL 147


>U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protein
           15, isoform b protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 228 VPPXETRDPQPSEATPTVAPXSXXEQAPSSTETPPXPQGGL 350
           VPP    DPQP+ A     P +      S+T + P P GGL
Sbjct: 108 VPP----DPQPTSAQARNPPVTVATTQASTTPSAPNPPGGL 144


>Z99281-31|CAI79273.1|  160|Caenorhabditis elegans Hypothetical
           protein Y57G11C.51 protein.
          Length = 160

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 252 PQPSEATPTVAPXSXXEQAPSSTETP 329
           PQP  +TP+ +  S    +PSS+ TP
Sbjct: 120 PQPDPSTPSSSTSSSTSSSPSSSSTP 145


>Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +3

Query: 231 PPXETRDPQPSEATPTVAPXSXXEQAPSSTETPPXP 338
           P  E   P P + TP  A      + P  TE PP P
Sbjct: 522 PIPEDTVPGPEDTTPGPAVTEEIPEVPEPTEEPPTP 557


>Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +3

Query: 231 PPXETRDPQPSEATPTVAPXSXXEQAPSSTETPPXP 338
           P  E   P P + TP  A      + P  TE PP P
Sbjct: 522 PIPEDTVPGPEDTTPGPAVTEEIPEVPEPTEEPPTP 557


>AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical
           protein T23E7.2e protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 252 PQPSEATPTVAPXSXXEQAPSSTETPPXPQGGLKSD 359
           P P  A P+  P +    APS  E PP P+    S+
Sbjct: 311 PTPKSAAPSEVPPTPKSAAPS--EVPPTPKSAAPSE 344


>AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical
           protein T23E7.2b protein.
          Length = 880

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 252 PQPSEATPTVAPXSXXEQAPSSTETPPXPQGGLKSD 359
           P P  A P+  P +    APS  E PP P+    S+
Sbjct: 261 PTPKSAAPSEVPPTPKSAAPS--EVPPTPKSAAPSE 294


>AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical
           protein T23E7.2c protein.
          Length = 885

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 252 PQPSEATPTVAPXSXXEQAPSSTETPPXPQGGLKSD 359
           P P  A P+  P +    APS  E PP P+    S+
Sbjct: 311 PTPKSAAPSEVPPTPKSAAPS--EVPPTPKSAAPSE 344


>AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical
           protein T23E7.2a protein.
          Length = 930

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 252 PQPSEATPTVAPXSXXEQAPSSTETPPXPQGGLKSD 359
           P P  A P+  P +    APS  E PP P+    S+
Sbjct: 311 PTPKSAAPSEVPPTPKSAAPS--EVPPTPKSAAPSE 344


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 213 TDNGFVPPXETRDPQPSEATPTVAPXSXXEQAPSSTETPPXPQ 341
           T    +    T+ P  +    T AP S    APS T+  P P+
Sbjct: 118 TQQVLITETTTQPPTTTTTLETPAPESTPSMAPSHTDPTPAPE 160


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 231 PPXETRDPQPSEATPTVAPXS-XXEQAPSSTETPPXPQG 344
           P   + DP+PSE  P+  P     E +PS    PP P G
Sbjct: 214 PVDPSEDPKPSE-PPSPGPVDPSDEPSPSDPPGPPGPPG 251


>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
           protein Y51B11A.1 protein.
          Length = 1079

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
 Frame = +3

Query: 192 SSMXTSQTDNGFVPPXETRDPQPSEATP-----TVAPXSXXEQAPSSTETP 329
           SS    QT     P   + +P  S  TP     T AP +   + PSS+ TP
Sbjct: 643 SSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSNTP 693


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 204  TSQTDNGFVPPXETRDPQPSEAT-PTVAPXSXXEQAPSSTETP 329
            TSQ+ N       T  P PS++T P V+  +    +  ST+TP
Sbjct: 1261 TSQSPNPSTSGSSTPTPNPSQSTSPVVSTTTGEMTSHGSTQTP 1303


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 240 ETRDPQPS-EATPTVAPXSXXEQAPSSTETP-PXP 338
           ET  P P+ E TP  AP +    AP + ETP P P
Sbjct: 641 ETPAPAPAAEETPAPAPAAAEYAAPVAEETPAPAP 675


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +3

Query: 186 THSSMXTSQTDN-GFVPPXETRDPQPSEATPTVAPXSXXEQAPSSTETPPXPQG 344
           +HSS+ ++     GF PP +   P PS         +  +Q       PP PQG
Sbjct: 273 SHSSISSTPVQQQGFAPPQQFGGPPPSGPPSEYGGYAPPQQQQQQFGAPP-PQG 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,077,230
Number of Sequences: 27780
Number of extensions: 165151
Number of successful extensions: 739
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)