Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326F02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   7.7  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 42  GY*ADPAPG*VSDKXITPLLRXIRXWS 122
           G+  DP  G + D  + P +  +  WS
Sbjct: 135 GFNYDPGRGHIEDDYVGPAMELVYAWS 161


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 454 IQAFRLIYDVPQXDVKKKIKXXAXSIXNY 368
           + AF L     Q DV  K+K    S+ NY
Sbjct: 337 VYAFALALHNLQKDVCSKLKGLCPSMANY 365


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 454 IQAFRLIYDVPQXDVKKKIKXXAXSIXNY 368
           + AF L     Q DV  K+K    S+ NY
Sbjct: 427 VYAFALALHNLQKDVCSKLKGLCPSMANY 455


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 279 VAPXSXXEQAPSSTETPP 332
           ++P      + SSTETPP
Sbjct: 523 ISPHHEYYDSKSSTETPP 540


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 129 RHSPYIXQXSXRHFRFXSKTHSS 197
           +HS Y+ Q   +H +  S  H+S
Sbjct: 94  QHSLYLQQQQQQHHQDSSSEHAS 116


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 279 VAPXSXXEQAPSSTETPP 332
           ++P      + SSTETPP
Sbjct: 221 ISPHHEYYDSKSSTETPP 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,152
Number of Sequences: 438
Number of extensions: 2149
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)