Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326F01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    29   0.56 
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    26   3.9  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   5.2  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   5.2  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    25   5.2  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   5.2  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    25   6.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.0  

>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 211 HTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIE 351
           +  CKL   V +VT   P   V +LN  + + +S  +N  +TN  I+
Sbjct: 63  YDNCKLSICVPIVTTCIPYHSVENLNFNIRQNISTTLNLEKTNDSIK 109


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 207 STYKMQVGQWSLRSHFGLSK 266
           S Y + V +WS+ S+FG SK
Sbjct: 38  SIYSIYVDKWSITSYFGNSK 57


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 491 DCSILLNISCPLLDRLTTSSFVLQFSIMLISAPAMKHPGLPDIMTA 354
           D S LLN    +L+ L  +   ++    L   P M+H  + D+MTA
Sbjct: 499 DKSQLLNAYQAVLNCLQDNDLPVRIQAALALQPLMRHLEVHDVMTA 544


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 26/120 (21%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
 Frame = +1

Query: 109 NSKILSALKILRSRKELFISGVHSRKYAVPASQVHTKCKLVNGVYVVTLDSPNVK-VNSL 285
           NS +   L  L+S     + GV +R+  +  + +     L + V  +T +  +++ +N L
Sbjct: 384 NSTVYQELLNLKSNNSS-VDGVKTRRQLLEENAL-----LSHKVLKLTEEIQDLETLNQL 437

Query: 286 NTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENC--KTKEEVVSLSKR 459
           NT++    S  +NE++  +   + ++IS +P    A  ++  ++ C   ++EE++ L+ +
Sbjct: 438 NTEIEARQSEKLNEVQEETQRLSQLLISSQP----ALTEVKHLKLCLSDSQEELLQLNAK 493


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 506 IYGFRDCSILLNISCPLL 453
           IYG++D ++ +   CPL+
Sbjct: 45  IYGYKDLNVTITYECPLM 62


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 131 LRS*EAVRNYSYPVYIAESMPFQQAKYIQNASWSMEFT 244
           LRS   +   S  +Y+   +P  +AKY+ N S S+ F+
Sbjct: 337 LRSYTLLAQESLTIYLLLFIPKLEAKYLNNLSKSLMFS 374


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = +1

Query: 163 ISGVHSRKYAVPASQVHTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNS 342
           +SG+ SR      SQV+  C   +  ++    +P+V++  +NT    ++  +  E  TN+
Sbjct: 28  LSGICSRTIQHADSQVNRLCISPDKKFLAAAGNPHVRLYDINTS--SQMPLMTFEGHTNN 85

Query: 343 GIEAAVIISGK 375
               A    GK
Sbjct: 86  VTAIAFHCDGK 96


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +2

Query: 449 CLKEDMKYSEESNN-HGN 499
           C+K+ M Y EES+  HGN
Sbjct: 424 CVKKQMNYREESHTPHGN 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,245
Number of Sequences: 5004
Number of extensions: 35557
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)