Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326F01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908 49 2e-06
02_05_0163 + 26400486-26400621,26401477-26401646,26402623-264027... 41 7e-04
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 36 0.020
03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798 36 0.026
01_03_0096 + 12492502-12492708,12500878-12501294,12501397-12501816 30 1.3
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026 29 1.7
10_08_0361 + 17207657-17207701,17208850-17209773 28 4.0
10_08_0760 + 20381117-20381350,20381451-20381639,20382317-20382910 28 5.2
09_02_0103 - 4324578-4324639,4324848-4324983 28 5.2
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672... 28 5.2
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 27 9.1
>06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908
Length = 88
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +1
Query: 190 AVPASQVHTKCKLV-NGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVII 366
A A++ K ++ NGV V+TLD P +N++N ++ ++E ETN ++ ++
Sbjct: 2 AAAAAEEFVKGRVTPNGVAVITLDRPKA-LNAMNLEMDLRYKAFLDEWETNPSVKCVLVE 60
Query: 367 SGKPGCFIAGADISMIENCKTKEEVVSL 450
S P F AG D+ + N T E++ +
Sbjct: 61 SSSPRAFSAGGDVKRLANDCTMPEIIEV 88
>02_05_0163 +
26400486-26400621,26401477-26401646,26402623-26402713,
26402822-26402873,26403462-26403565,26403648-26403724,
26403890-26404069
Length = 269
Score = 40.7 bits (91), Expect = 7e-04
Identities = 17/54 (31%), Positives = 32/54 (59%)
Frame = +1
Query: 253 LDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMI 414
L+ P VK N++N + M + +V ++E + ++ ++ S PG F AGAD+ +
Sbjct: 52 LERPEVK-NAINWEAMRLLRGVVEKVEADDTVKVVLVTSSVPGVFCAGADLKAL 104
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 35.9 bits (79), Expect = 0.020
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Frame = +1
Query: 190 AVPASQVHTKCKL-VNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVII 366
A A++ T+ ++ +GV V+T+ +P VNSL+ V+ + E + ++A +++
Sbjct: 3 AAAAAKGRTEMEVGADGVAVITICNP--PVNSLSIDVLLSLKENYAEALRRNDVKA-IVV 59
Query: 367 SGKPGCFIAGADISMIENCK-TKEEVVSLSKRGHEIFR-RIEQSRKPYIAAI 516
+GK G F G DIS + + K E + +I +E + KP +AAI
Sbjct: 60 TGKGGKFSGGFDISSFGSVQGGKVEQPKVGYISIDIITDTLEAATKPSVAAI 111
>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
Length = 268
Score = 35.5 bits (78), Expect = 0.026
Identities = 25/93 (26%), Positives = 49/93 (52%)
Frame = +1
Query: 238 VYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIE 417
V VVT++ P +N+L +M ++ ++ + G+ AAV+++G+ F +G D++ E
Sbjct: 23 VAVVTINRPKA-LNALTRPMMVSLAAAFRRLDADDGV-AAVVLAGRGRAFCSGVDLTAAE 80
Query: 418 NCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAI 516
K +V + ++E+ RKP + AI
Sbjct: 81 EV-FKGDV---KDPAADPVVQMERCRKPIVGAI 109
>01_03_0096 + 12492502-12492708,12500878-12501294,12501397-12501816
Length = 347
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 331 ETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVV--SLSKRGHEI 471
+ NSG+ A +I CF+ G D S++ N T E + S RG E+
Sbjct: 49 KNNSGVAAGLIRLHFHDCFVRGCDASVLINGSTTERSAGPNASLRGFEV 97
>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
Length = 961
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 346 IEAAVIISGKPGCFIAGADISMIENCKTKEEVVSL--SKRGHE 468
+ A + G G F G D S + NC K V+ L S+RG E
Sbjct: 572 VGATDCVYGAQGAFYKGLDFSKVLNCDRKPAVLDLPPSRRGDE 614
>10_08_0361 + 17207657-17207701,17208850-17209773
Length = 322
Score = 28.3 bits (60), Expect = 4.0
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Frame = +1
Query: 121 LSALK-ILRSRKELFISGVHSR---KYAVPASQVHTKCKL-VNGVYVVTLDSPNV-KVNS 282
LSA++ I +S++E+F +G+H + K A ++ L V +++ P+V K
Sbjct: 41 LSAIEGIDKSKQEMFFAGMHLKNEDKLADYNIMTNSSVDLYVTDAIQISVRIPSVGKTTK 100
Query: 283 LNTQVMEEVSNIVNEIETNSGI 348
LN + +++I EIE GI
Sbjct: 101 LNMRKSNSIADIKAEIEQEEGI 122
>10_08_0760 + 20381117-20381350,20381451-20381639,20382317-20382910
Length = 338
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +1
Query: 295 VMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADIS-MIENCK----TKEEVVSLSKR 459
V +EVS V+ N G+ A ++ CF+ G D S +I++ K K+ + S R
Sbjct: 49 VQQEVSKAVS---ANPGLAAGLVRLHFHDCFVRGCDASVLIDSTKGNQAEKDAGPNTSLR 105
Query: 460 GHEIFRRIE 486
G E+ RI+
Sbjct: 106 GFEVVDRIK 114
>09_02_0103 - 4324578-4324639,4324848-4324983
Length = 65
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +1
Query: 127 ALKILRSRKELF---ISGVHSRKYAVPASQVHTKCKLVNGVY-VVTLDSP 264
A+ + RS L+ I+ HSR +V + VH +CKL+N Y +TL P
Sbjct: 14 AVPVARSSPPLYAVNITTSHSR--SVTSRFVHPRCKLINDNYSPITLSQP 61
>02_02_0096 -
6727844-6727957,6728149-6728247,6728332-6728410,
6728534-6728634,6728740-6728808,6729180-6729220,
6729992-6730836,6730924-6731027,6731479-6732354
Length = 775
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/96 (22%), Positives = 41/96 (42%)
Frame = +1
Query: 163 ISGVHSRKYAVPASQVHTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNS 342
+S S + V A +V+ CKLV G+Y D + + ++ +E + +++
Sbjct: 283 LSRHRSLLFKVLADRVNLPCKLVKGIYYTGTDEGAINLVKIDFDSVEYIVDLM------- 335
Query: 343 GIEAAVIISGKPGCFIAGADISMIENCKTKEEVVSL 450
G +I S G ++ S + N +E V L
Sbjct: 336 GAPGTLIPSDISGSQFQDSNNSQLSNDAIEESVAEL 371
>07_01_0389 -
2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +1
Query: 229 VNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIE 351
+N V L P+ K+N+ +TQV V N+ + ++
Sbjct: 701 INAVLGCPLHLPSTKLNAFSTQVATRVDNVSQRARNETAVK 741
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,293,744
Number of Sequences: 37544
Number of extensions: 201011
Number of successful extensions: 550
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -