Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326F01f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 85 3e-17
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 85 3e-17
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 85 3e-17
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 76 2e-14
AF045646-15|AAK29838.1| 284|Caenorhabditis elegans Enoyl-coa hy... 35 0.041
Z74030-16|CAI79165.1| 481|Caenorhabditis elegans Hypothetical p... 29 2.7
Z74030-7|CAA98447.2| 559|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z74030-6|CAA98444.2| 508|Caenorhabditis elegans Hypothetical pr... 29 2.7
U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical p... 28 4.7
U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astaci... 28 4.7
U80454-6|AAB37879.1| 786|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z73105-1|CAA97442.2| 525|Caenorhabditis elegans Hypothetical pr... 27 8.1
AY515708-1|AAR99658.1| 525|Caenorhabditis elegans bestrophin 1 ... 27 8.1
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 85.0 bits (201), Expect = 3e-17
Identities = 43/109 (39%), Positives = 67/109 (61%)
Frame = +1
Query: 190 AVPASQVHTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIIS 369
+ PA Q + + V VV +D PN K N LN + E+ +++++++ I++ V++S
Sbjct: 51 SAPAMQTTHRVEKQGDVAVVKIDLPNTKENVLNKALFAEMKATLDKLQSDESIKSIVVMS 110
Query: 370 GKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAI 516
GKP F+AGADI MI+ T +LS+ G E F RIE+S+KP +AAI
Sbjct: 111 GKPNSFVAGADIQMIKAEGTATATETLSREGQEQFFRIEKSQKPVVAAI 159
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 85.0 bits (201), Expect = 3e-17
Identities = 43/109 (39%), Positives = 67/109 (61%)
Frame = +1
Query: 190 AVPASQVHTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIIS 369
+ PA Q + + V VV +D PN K N LN + E+ +++++++ I++ V++S
Sbjct: 25 SAPAMQTTHRVEKQGDVAVVKIDLPNTKENVLNKALFAEMKATLDKLQSDESIKSIVVMS 84
Query: 370 GKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAI 516
GKP F+AGADI MI+ T +LS+ G E F RIE+S+KP +AAI
Sbjct: 85 GKPNSFVAGADIQMIKAEGTATATETLSREGQEQFFRIEKSQKPVVAAI 133
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 85.0 bits (201), Expect = 3e-17
Identities = 43/109 (39%), Positives = 67/109 (61%)
Frame = +1
Query: 190 AVPASQVHTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIIS 369
+ PA Q + + V VV +D PN K N LN + E+ +++++++ I++ V++S
Sbjct: 51 SAPAMQTTHRVEKQGDVAVVKIDLPNTKENVLNKALFAEMKATLDKLQSDESIKSIVVMS 110
Query: 370 GKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAI 516
GKP F+AGADI MI+ T +LS+ G E F RIE+S+KP +AAI
Sbjct: 111 GKPNSFVAGADIQMIKAEGTATATETLSREGQEQFFRIEKSQKPVVAAI 159
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 75.8 bits (178), Expect = 2e-14
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Frame = +1
Query: 133 KILRSRKELFISGVHSRKYAVPASQVHT--KCKLVNGVYVVTLDSPNVKVNSLNTQVMEE 306
+++ +F + + R ++ A VH+ + + V V+ +D PN N LN + E
Sbjct: 4 RVVHRSSSVFRTNLSFRLFSQSAFAVHSTHRVEKQGDVAVMKIDLPNTTENVLNKALFAE 63
Query: 307 VSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIE 486
++ ++ ++++ ++A V++SGKP F+AGADI M + KT V +L + G + IE
Sbjct: 64 MNETLDRLQSDQSVKAIVVMSGKPNSFVAGADIQMFKAEKTAAGVSNLLREGQKQLLTIE 123
Query: 487 QSRKPYIAAI 516
S+KP +AAI
Sbjct: 124 LSQKPIVAAI 133
>AF045646-15|AAK29838.1| 284|Caenorhabditis elegans Enoyl-coa
hydratase protein 5 protein.
Length = 284
Score = 34.7 bits (76), Expect = 0.041
Identities = 21/94 (22%), Positives = 45/94 (47%)
Frame = +1
Query: 235 GVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMI 414
G+ ++ ++ P K NSL M++ +++E++ + ++ S F +GAD+
Sbjct: 41 GITILNMNRP-AKKNSLGRVFMDQFREVLDELKYDPKTRVVILNSKCDNVFCSGADLKE- 98
Query: 415 ENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAI 516
+++E + F +E+ +P IAAI
Sbjct: 99 RKTMSQQEATRFVNGLRDSFTDVERLPQPVIAAI 132
>Z74030-16|CAI79165.1| 481|Caenorhabditis elegans Hypothetical
protein D1054.9e protein.
Length = 481
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 223 KLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAV 360
K +NGV + S N+ N NT+++ + ++V + + S EA +
Sbjct: 377 KAINGVSASGVSSSNLLTNEPNTELLAAIKDVVAKFKVASLDEAGI 422
>Z74030-7|CAA98447.2| 559|Caenorhabditis elegans Hypothetical
protein D1054.9b protein.
Length = 559
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 223 KLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAV 360
K +NGV + S N+ N NT+++ + ++V + + S EA +
Sbjct: 404 KAINGVSASGVSSSNLLTNEPNTELLAAIKDVVAKFKVASLDEAGI 449
>Z74030-6|CAA98444.2| 508|Caenorhabditis elegans Hypothetical
protein D1054.9a protein.
Length = 508
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 223 KLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAV 360
K +NGV + S N+ N NT+++ + ++V + + S EA +
Sbjct: 404 KAINGVSASGVSSSNLLTNEPNTELLAAIKDVVAKFKVASLDEAGI 449
>U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical
protein C32E8.9 protein.
Length = 268
Score = 27.9 bits (59), Expect = 4.7
Identities = 22/90 (24%), Positives = 41/90 (45%)
Frame = +1
Query: 247 VTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCK 426
V LD P K N L+ ++M++ + A +++SG F +GAD+ +I++
Sbjct: 38 VILDRPE-KNNCLSGEMMKQFGEHTELFSDDQN--AIIVVSGVGKSFCSGADLGLIKDIS 94
Query: 427 TKEEVVSLSKRGHEIFRRIEQSRKPYIAAI 516
++ V + + I + S IA I
Sbjct: 95 DQKLGVQMFEYMSSILSLLHSSPAISIAKI 124
>U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astacin
protease protein38 protein.
Length = 745
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = -1
Query: 374 LPDIMTAASIPEFVSISFTMLLTSSITWVLSEFTLTFGESKVTT*TPLTNL 222
L + ++++ E ++S T T S TW+ +E + GE+++TT +P L
Sbjct: 549 LTPLTSSSTTTESTTVSST---TQSTTWLPTEPSFATGETEITTASPTITL 596
>U80454-6|AAB37879.1| 786|Caenorhabditis elegans Hypothetical
protein T16A1.2 protein.
Length = 786
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 247 VTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGI 348
V D PN+K NSL Q + + IV I +GI
Sbjct: 373 VNSDIPNLKYNSLLPQKLHLIGYIVQVINNKNGI 406
>Z73105-1|CAA97442.2| 525|Caenorhabditis elegans Hypothetical
protein R13.3 protein.
Length = 525
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 515 IAAIYGFRDCSILLNISCPLLDRLTTSSFVLQ 420
+A + FRDCSI + P ++ + ++ F+L+
Sbjct: 136 LAQVLVFRDCSIQVRKRFPTMESIVSAGFMLE 167
>AY515708-1|AAR99658.1| 525|Caenorhabditis elegans bestrophin 1
protein.
Length = 525
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 515 IAAIYGFRDCSILLNISCPLLDRLTTSSFVLQ 420
+A + FRDCSI + P ++ + ++ F+L+
Sbjct: 136 LAQVLVFRDCSIQVRKRFPTMESIVSAGFMLE 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,203,923
Number of Sequences: 27780
Number of extensions: 190701
Number of successful extensions: 577
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -