Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326F01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    29   0.029
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   1.4  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   3.3  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   3.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   3.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 29.1 bits (62), Expect = 0.029
 Identities = 13/61 (21%), Positives = 34/61 (55%)
 Frame = +1

Query: 238  VYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIE 417
            V + +L + +  +NS+  +  + ++++  +I TN+  + A  I GKP   +  +  S+++
Sbjct: 854  VPITSLPASSTSINSITVE-KDVINDVKTQITTNTPAKKATNIGGKPVAVVKSSAQSLLQ 912

Query: 418  N 420
            +
Sbjct: 913  S 913


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = +1

Query: 178 SRKYAVPASQVHTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAA 357
           +R++A+ A  +  K +L+ GV  + +  P         ++ +EVS+ + +I  N+   A 
Sbjct: 133 TREHALLAFTLGVK-QLIVGVNKMDMTDPPYSEARFE-EIKKEVSSYIKKIGYNTASVAF 190

Query: 358 VIISGKPG 381
           V ISG  G
Sbjct: 191 VPISGWHG 198


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +1

Query: 178 SRKYAVPASQVHTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAA 357
           +R++A+ A  +  K +L+ GV  +    P         ++ +EVS+ + +I  N    A 
Sbjct: 60  TREHALLAFTLGVK-QLIVGVNKMDSTEPPYSETRFE-EIKKEVSSYIKKIGYNPAAVAF 117

Query: 358 VIISGKPG 381
           V ISG  G
Sbjct: 118 VPISGWHG 125


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +1

Query: 178 SRKYAVPASQVHTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAA 357
           +R++A+ A  +  K +L+ GV  +    P         ++ +EVS+ + +I  N    A 
Sbjct: 76  TREHALLAFTLGVK-QLIVGVNKMDSTEPPYSETRFE-EIKKEVSSYIKKIGYNPAAVAF 133

Query: 358 VIISGKPG 381
           V ISG  G
Sbjct: 134 VPISGWHG 141


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +1

Query: 178 SRKYAVPASQVHTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAA 357
           +R++A+ A  +  K +L+ GV  +    P         ++ +EVS+ + +I  N    A 
Sbjct: 133 TREHALLAFTLGVK-QLIVGVNKMDSTEPPYSETRFE-EIKKEVSSYIKKIGYNPAAVAF 190

Query: 358 VIISGKPG 381
           V ISG  G
Sbjct: 191 VPISGWHG 198


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 133 KILRSRKELFISGVHSRKYAV 195
           ++LR RKELFI+ V    Y +
Sbjct: 409 RLLRKRKELFIAIVCFVSYLI 429


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 133 KILRSRKELFISGVHSRKYAV 195
           ++LR RKELFI+ V    Y +
Sbjct: 462 RLLRKRKELFIAIVCFVSYLI 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,865
Number of Sequences: 438
Number of extensions: 2364
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)