Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326E12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     27   1.7  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   2.2  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    26   3.9  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    25   6.8  
SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|ch...    25   9.0  

>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 41  PTLVFFVGELLLMNTFSTSPLYKMVLLTSILNTL 142
           P  +   G LLL+    TS  Y++ LL  I+N L
Sbjct: 776 PAFIEVAGNLLLVTEKPTSQTYRVFLLEVIINAL 809


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 26  ILFPFPTLVFFVGELLLMNTFSTSPLYKMVLLT---SILNTLDLWFVF 160
           I   FP   F VG  +     ST+ L K VLLT   S+LNT DL  ++
Sbjct: 525 IALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLKKSLLNT-DLPLIY 571


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 79  EHFFNFSPIQDGAPYLYPQYAGFMVRVSTDI 171
           EH  N SPI + AP+ Y     F+  + +D+
Sbjct: 708 EHVSNDSPIINEAPFDYKNQKNFIADLDSDV 738


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 41  PTLVFFVGELLLMNTF 88
           PTL+FFVG L L++ F
Sbjct: 112 PTLMFFVGSLGLLSNF 127


>SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 190

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 95  SPLYKMVLLTSILNTLDL-WFVFRLTLT*LTV 187
           S L+ + +L + +N  +L WF++ LT+  LTV
Sbjct: 36  SLLWPLRILYATINEFNLPWFIYSLTILDLTV 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,486
Number of Sequences: 5004
Number of extensions: 35087
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)