Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326E12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973...    28   4.0  
11_01_0788 + 6599962-6602700                                           27   6.9  
07_01_0760 - 5844349-5844401,5844521-5844665,5844782-5845297,584...    27   9.1  

>03_02_0599 -
           9730204-9730314,9730766-9731549,9731631-9732051,
           9732139-9732385,9733730-9733921,9734071-9734204,
           9734316-9734477,9736162-9736200,9737507-9737825
          Length = 802

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/48 (27%), Positives = 30/48 (62%)
 Frame = -3

Query: 165 SRNTNHKSSVLRIEVRSTILYRGEVEKVFISSNSPTKNTRVGNGNNMN 22
           SRNT ++ +   +++ S+I    + ++V   +N+P  +++V +GN+ N
Sbjct: 415 SRNTQNEPTTQTVDLISSIARSTDDKQVVRINNAPDCSSKVPDGNDKN 462


>11_01_0788 + 6599962-6602700
          Length = 912

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 490 HP*SLKPYYSNDSFAIFFQRKFCKTMHT 407
           H   LKP   ND+F +F ++ F  +MH+
Sbjct: 327 HRLKLKPLEHNDAFDLFCKKTFYNSMHS 354


>07_01_0760 -
           5844349-5844401,5844521-5844665,5844782-5845297,
           5845405-5845596,5845686-5845817,5845926-5846069
          Length = 393

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 115 APYLYPQYAGFMVRVSTDIDVTNCQMYQVDLCLS 216
           AP   P   G  +  S D++VT+C +   D C+S
Sbjct: 198 APETAPNTDGIHITRSRDVEVTDCMIKTGDDCMS 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,536,649
Number of Sequences: 37544
Number of extensions: 187871
Number of successful extensions: 363
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)