Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326E12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily ass...    29   1.5  
Z50872-4|CAA90757.2|  498|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U80024-3|AAK18893.1|  342|Caenorhabditis elegans Seven tm recept...    28   4.7  
U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 174 protein.
          Length = 128

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 474 SHTIRMTVLQFFFNVNFAKLCTLLFLQFKIHRNKYTHNRNKHKYYVF 334
           +H    T  + FF  +   L   ++  FK H+   +H R +H  Y F
Sbjct: 44  AHNASETWKKIFFIASIPCLALTMYAAFKDHKKHMSHERPEHVEYAF 90


>Z50872-4|CAA90757.2|  498|Caenorhabditis elegans Hypothetical
           protein C05D12.1 protein.
          Length = 498

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 347 LCLFRLCVYLFLWILNCKNKSVHSFAKFTLKKNC 448
           +C  R C++LF+++L+ +  S  SF +  + ++C
Sbjct: 3   ICPLRNCLFLFIFLLSYQQASSFSFEQCNVTRSC 36


>U80024-3|AAK18893.1|  342|Caenorhabditis elegans Seven tm receptor
           protein 190 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/47 (23%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 26  ILFPFPTLVFFVGELLLMNT-FSTSPLYKMVLLTSILNTLDLWFVFR 163
           +L  FP  +FF+G +L ++T F+T  +   +++   ++ L  + + +
Sbjct: 254 VLMHFPITIFFIGPMLTLDTDFTTYVVLNTIIMYPAIDPLPNFIIIK 300


>U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical
           protein F30B5.8 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = +2

Query: 344 YLCLFRLCVYL----FLWILNCKNKSVHSFAKFT 433
           Y+C+  L V L    F+W    KN+S H+F+K T
Sbjct: 180 YVCISTLSVVLVFRLFVWKCCSKNQSAHTFSKAT 213


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 83   TFSTSPLYKMVLLTSILNTLDLWFVFRLTLT*LTV 187
            +F+T P Y+MV     LN + L+F FR  L   TV
Sbjct: 6939 SFATIPFYQMVEQNRKLNEISLFFNFRQKLDYPTV 6973


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,847,409
Number of Sequences: 27780
Number of extensions: 199392
Number of successful extensions: 467
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)