Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326E11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    28   0.73 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   3.0  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   3.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   3.9  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   3.9  
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc...    25   9.0  

>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = -1

Query: 209 NLCHQFDP-IDQVIPVVLEGL--QILDLL*VLEDRQDLDVQ 96
           +LC    P +D+++P++L+G+    +DLL +  D  D DV+
Sbjct: 292 DLCSALGPYLDKIVPMLLQGMVYSDMDLLLLGNDADDYDVE 332


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 439 SNGSRESIKPTHPHFSFL 386
           SN S  S KP+HP  SFL
Sbjct: 805 SNNSSNSFKPSHPSQSFL 822


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 81  PGKPGYPNSPLSPFSPCEP 25
           P     PN+P +PFSP  P
Sbjct: 269 PSMKDVPNNPFTPFSPINP 287


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 482 PLDQVLLEDHDFLFLQWVPRVHQTHASPFLL 390
           PLD  +L+ H     QW   + + H   F L
Sbjct: 140 PLDYTILDHHSGTIAQWRDTIEEIHRRGFYL 170


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 72  PGYPNSPLSPFSPCEPSAPG*PG 4
           PGYP  P  P  P   + PG PG
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPG 562


>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
           Sen34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 482 PLDQVLLEDHDFLFLQWVP 426
           PLD +  ++HD   L W+P
Sbjct: 129 PLDPLNYDEHDSFDLSWIP 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,853
Number of Sequences: 5004
Number of extensions: 28882
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)