Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326E11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 33 0.18
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299... 29 3.0
11_03_0222 + 11880333-11880551,11880667-11880736,11880839-118809... 28 5.2
01_01_1143 - 9064210-9065682 28 5.2
05_01_0072 - 486211-486254,486350-486524,486658-486852,487489-48... 27 6.9
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 27 6.9
01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535 27 6.9
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 27 9.1
06_01_0080 + 644021-645463 27 9.1
01_05_0109 + 18201344-18202811,18203234-18203883 27 9.1
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 32.7 bits (71), Expect = 0.18
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +2
Query: 401 GMRGFDGLSGPIGEKGNRGPQGVPGLKGNLGISGEPGRPG 520
G GF G GP G G GP G G +G +G G+ PG
Sbjct: 1044 GPGGFGGRDGPGGFIGREGPGGFGGREGPVGFGGQES-PG 1082
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/40 (42%), Positives = 18/40 (45%)
Frame = +2
Query: 401 GMRGFDGLSGPIGEKGNRGPQGVPGLKGNLGISGEPGRPG 520
G GF G GP G G GP G G + G G G PG
Sbjct: 1053 GPGGFIGREGPGGFGGREGPVGFGGQESPGGFGGRKG-PG 1091
>02_03_0161 +
15828887-15828985,15829066-15829686,15829759-15829908,
15829994-15830389,15830455-15830487,15830553-15830693,
15830793-15830924,15830999-15831082,15831159-15831461,
15831543-15831734,15831805-15831942,15832019-15832143,
15832223-15832319
Length = 836
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 30 HREKRVIKEN*GIQVYPVLQASLDVQVLSVLKDLKEIKDLKALQDYRDYLV 182
H +R + G + P + + Q L++LKD+ IK++ + RDYL+
Sbjct: 169 HFLRRFVLFTIGYILCPTTKPIVSSQYLALLKDIDNIKNINWARITRDYLI 219
>11_03_0222 +
11880333-11880551,11880667-11880736,11880839-11880944,
11881490-11881556,11881597-11881692
Length = 185
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 69 QVYPVLQASL-DVQVLSVLKDLKEIKDLKALQDYRDYLVYWVKLVTEV 209
+V PV+ +L D+ + S + +LKE+ + + YL YW ++++
Sbjct: 117 EVAPVISKNLEDILMSSGMLNLKELCLISGKASWLAYLAYWASPISQI 164
>01_01_1143 - 9064210-9065682
Length = 490
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 419 GLSGPIGEKGNRGPQGVPGLKGNLGISGEPGRPG 520
GL+ +G N PG LG SG PG PG
Sbjct: 428 GLNNILGVGANGSGLPNPGASAGLGSSGLPGMPG 461
>05_01_0072 -
486211-486254,486350-486524,486658-486852,487489-487599,
487693-487905,488432-488539,488621-488762,489157-490418,
490460-490480,490842-491228
Length = 885
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -3
Query: 69 GYPNSPL-SPFSPCEPSAPG*P 7
GY SPL SP P P+APG P
Sbjct: 471 GYSGSPLMSPVLPSSPAAPGSP 492
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 81 PGKPGYPNSPLSPFSPCEPSAPG 13
PG PGYP +P P P + PG
Sbjct: 118 PGIPGYPGAPNVPTMPQTGAPPG 140
>01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535
Length = 263
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 215 GPKGDKGDAGLAAEKG 262
G KGDKGD G A +KG
Sbjct: 93 GAKGDKGDGGDAGDKG 108
>09_06_0020 -
20267190-20267612,20269086-20269495,20269573-20269747,
20270833-20271066,20271164-20271265,20271354-20272091,
20272204-20272321,20272417-20272667,20272768-20272932
Length = 871
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 404 MRGFDGLSG-PIGEKGNRGPQGVPGLKGNLGISGEPG 511
M G GL+G P+G R P G+ GL G + + G
Sbjct: 302 MGGSSGLTGGPVGSAAMRLPAGIGGLDGAMHAAAADG 338
>06_01_0080 + 644021-645463
Length = 480
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +3
Query: 78 PVLQASLDVQVLSVLKDLKEIKDLKALQ-DYRDYL-VYWVKLVTEVIRALKVTK 233
P ++ASLD + LS LKD + ++ K Q D+ L V +L+ +V +AL +K
Sbjct: 282 PTIEASLDSRFLSGLKD-ERVEAAKVFQGDFSSNLPVDKAQLIEDVRQALYASK 334
>01_05_0109 + 18201344-18202811,18203234-18203883
Length = 705
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 413 FDGLSGPIGEKGNRGPQGVPGLKGNLGISGEP 508
++ LSGPI + G +G GN G+ G P
Sbjct: 249 YNNLSGPIPQNGALENRGPTAFVGNPGLCGPP 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,193,798
Number of Sequences: 37544
Number of extensions: 186249
Number of successful extensions: 631
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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