Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326E07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    28   0.73 
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    25   5.2  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    25   9.0  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   9.0  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    25   9.0  

>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 519 FFFFLNVILMLLFHSVLKNKQK*S*LFTNQVFRSKLRSRW 400
           FF FL   + LLFHS+L+     + L   + + S LRS W
Sbjct: 203 FFLFLLCTIQLLFHSILRLGYHFNALRDMRQYPSFLRSWW 242


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -1

Query: 221 LQLLERHMRCRPQKMELCRLQKMELCRQHMGQLQHSVLQLRKELRSAQQQQVRELLVRSH 42
           L LL    R R  +    RLQ +E  R+    LQ   +Q++++ ++ QQQ  +     +H
Sbjct: 271 LLLLMDDQRKRDFQPTFQRLQFIENVRRKRAILQQRQMQMQQQQKAQQQQSPKAQQPPAH 330

Query: 41  NERR*EPVQQR 9
             +   PVQ++
Sbjct: 331 LVQS-APVQRK 340


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 121 SIACCNYGRSCVARSNNRCG 62
           ++A CNYGR C+   N+  G
Sbjct: 313 NLAGCNYGRDCLDEINHYKG 332


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 185 QKMELCRLQKMELCRQHMGQLQHSVLQLRKELRSAQQQQVRE 60
           Q+ +L   Q  E+ RQ M   QH       ++  A+QQ++ +
Sbjct: 357 QQAQLAAQQAAEMERQRMAAQQHQQALEAIQMAQAEQQRIAQ 398


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -1

Query: 191 RPQKMELCRLQKMELCRQHMGQLQHSVLQLRKELRSAQQQQVRELLVRSHN 39
           RP   +L + Q+ EL    +   + SVL   K+    Q  ++R  +  S N
Sbjct: 99  RPDIYDLKKSQQFELDTSRLSSDEESVLDYSKDSEDEQDYELRPRVSSSWN 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,280,971
Number of Sequences: 5004
Number of extensions: 20083
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)