Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326E07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71266-3|CAA95840.1|  292|Caenorhabditis elegans Hypothetical pr...    30   0.87 
DQ340625-1|ABC65813.1|  292|Caenorhabditis elegans chondroitin p...    30   0.87 
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    28   4.7  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AC024748-4|AAF60410.1|  251|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z71266-3|CAA95840.1|  292|Caenorhabditis elegans Hypothetical
           protein R06C7.4 protein.
          Length = 292

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 166 GCRKWSCVGSIWASCSIACCNYGRSCVARSNNRCGSY--WCGRITS 35
           GC    C+G++  +C+   C +G  C  + ++ CG +   C  IT+
Sbjct: 199 GCGSGKCIGALAGTCNCNSCVFGWPC--QEDSACGGFNGACNSITA 242


>DQ340625-1|ABC65813.1|  292|Caenorhabditis elegans chondroitin
           proteoglycan-3 protein.
          Length = 292

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 166 GCRKWSCVGSIWASCSIACCNYGRSCVARSNNRCGSY--WCGRITS 35
           GC    C+G++  +C+   C +G  C  + ++ CG +   C  IT+
Sbjct: 199 GCGSGKCIGALAGTCNCNSCVFGWPC--QEDSACGGFNGACNSITA 242


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = -2

Query: 172 CVGCRKWSCVGSIWASCSIACCNYGRSCVARSNNRCGSYWCG 47
           C  CR   C       C   CC   R C       CG   CG
Sbjct: 76  CCCCRPKCCCTCCRTCCCTRCCTCCRPCCCGCGCGCGCCGCG 117


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = -2

Query: 172 CVGCRKWSCVGSIWASCSIACCNYGRSCVARSNNRCGSYWCG 47
           C  CR   C       C   CC   R C       CG   CG
Sbjct: 79  CCCCRPKCCCTCCRTCCCTRCCTCCRPCCCGCGCGCGCCGCG 120


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = -2

Query: 172 CVGCRKWSCVGSIWASCSIACCNYGRSCVARSNNRCGSYWCG 47
           C  CR   C       C   CC   R C       CG   CG
Sbjct: 74  CCCCRPKCCCTCCRTCCCTRCCTCCRPCCCGCGCGCGCGCCG 115


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 181 KWSCVGCRKWSCVGSIWASCSIACCNYGRSCVARSNN 71
           ++S  GC K  C+  + A+CS   C+ G +CV   +N
Sbjct: 61  RFSRRGCSK-CCLLRVQANCSADLCHNGGTCVPSEHN 96


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 181 KWSCVGCRKWSCVGSIWASCSIACCNYGRSCVARSNN 71
           ++S  GC K  C+  + A+CS   C+ G +CV   +N
Sbjct: 61  RFSRRGCSK-CCLLRVQANCSADLCHNGGTCVPSEHN 96


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 115 LCCSWPICCLHSSIFCS 165
           LCC    CC+H+ +FC+
Sbjct: 282 LCCCICHCCMHACMFCT 298


>AC024748-4|AAF60410.1|  251|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.1 protein.
          Length = 251

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 122 QHSVLQLRKELRSAQQQQVR 63
           + S +Q R++LRS QQQQ R
Sbjct: 227 RRSTMQTRRQLRSVQQQQFR 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,380,403
Number of Sequences: 27780
Number of extensions: 130875
Number of successful extensions: 539
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)