Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326E06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 213 1e-56
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 213 1e-56
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.42
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.7
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 2.2
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 3.9
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 5.2
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 9.0
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 213 bits (521), Expect = 1e-56
Identities = 101/153 (66%), Positives = 118/153 (77%)
Frame = -2
Query: 520 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 341
KTH+GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G D K N
Sbjct: 241 KTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----N 293
Query: 340 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 161
AST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R ALE
Sbjct: 294 ASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEP 353
Query: 160 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 62
++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 354 VSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 213 bits (521), Expect = 1e-56
Identities = 101/153 (66%), Positives = 118/153 (77%)
Frame = -2
Query: 520 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 341
KTH+GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G D K N
Sbjct: 241 KTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----N 293
Query: 340 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 161
AST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R ALE
Sbjct: 294 ASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEP 353
Query: 160 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 62
++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 354 VSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.42
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 353 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 451
NFA+L+ SL ++ +F++H +T + T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 320 QVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 442
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 83 HGYTQEGSYSRRSCGYHNPS 24
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 305 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 433
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 365 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 490
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +2
Query: 77 THECSLVSRRLESTMTELGRGVNEFEVDLF*CSPLCMHTQRLSKSNDTLFRSHAATLDHH 256
THE +L S++ + E+G ++ E+ F P C +D LF+ H H
Sbjct: 212 THEHTLFSKKGLTKHNEVGDQGSDLEITGFKGHPKCEFCNTHFYDDDELFK-HCRE-KHE 269
Query: 257 KVVVYFTIMGETSH 298
+ + + G +H
Sbjct: 270 RCYICDQVAGRPTH 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,861
Number of Sequences: 5004
Number of extensions: 46839
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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