Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326E06f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 239 9e-64
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 239 9e-64
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 239 9e-64
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 239 9e-64
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 239 9e-64
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 239 9e-64
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 239 9e-64
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 239 9e-64
Z93383-7|CAB07621.1| 285|Caenorhabditis elegans Hypothetical pr... 27 6.2
U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical pr... 27 6.2
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 239 bits (585), Expect = 9e-64
Identities = 111/157 (70%), Positives = 131/157 (83%)
Frame = -2
Query: 520 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 341
KTHKGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++GK NN
Sbjct: 243 KTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NN 299
Query: 340 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 161
STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EK
Sbjct: 300 GSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEK 359
Query: 160 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 50
INLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 360 INLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 239 bits (585), Expect = 9e-64
Identities = 111/157 (70%), Positives = 131/157 (83%)
Frame = -2
Query: 520 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 341
KTHKGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++GK NN
Sbjct: 243 KTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NN 299
Query: 340 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 161
STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EK
Sbjct: 300 GSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEK 359
Query: 160 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 50
INLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 360 INLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 239 bits (585), Expect = 9e-64
Identities = 111/157 (70%), Positives = 131/157 (83%)
Frame = -2
Query: 520 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 341
KTHKGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++GK NN
Sbjct: 145 KTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NN 201
Query: 340 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 161
STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EK
Sbjct: 202 GSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEK 261
Query: 160 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 50
INLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 262 INLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 298
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 239 bits (585), Expect = 9e-64
Identities = 111/157 (70%), Positives = 131/157 (83%)
Frame = -2
Query: 520 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 341
KTHKGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++GK NN
Sbjct: 195 KTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NN 251
Query: 340 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 161
STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EK
Sbjct: 252 GSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEK 311
Query: 160 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 50
INLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 312 INLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 239 bits (585), Expect = 9e-64
Identities = 111/157 (70%), Positives = 131/157 (83%)
Frame = -2
Query: 520 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 341
KTHKGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++GK NN
Sbjct: 243 KTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NN 299
Query: 340 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 161
STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EK
Sbjct: 300 GSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEK 359
Query: 160 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 50
INLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 360 INLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 239 bits (585), Expect = 9e-64
Identities = 111/157 (70%), Positives = 131/157 (83%)
Frame = -2
Query: 520 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 341
KTHKGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++GK NN
Sbjct: 145 KTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NN 201
Query: 340 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 161
STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EK
Sbjct: 202 GSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEK 261
Query: 160 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 50
INLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 262 INLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 298
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 239 bits (585), Expect = 9e-64
Identities = 111/157 (70%), Positives = 131/157 (83%)
Frame = -2
Query: 520 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 341
KTHKGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++GK NN
Sbjct: 195 KTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NN 251
Query: 340 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 161
STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EK
Sbjct: 252 GSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEK 311
Query: 160 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 50
INLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 312 INLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 239 bits (585), Expect = 9e-64
Identities = 111/157 (70%), Positives = 131/157 (83%)
Frame = -2
Query: 520 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 341
KTHKGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++GK NN
Sbjct: 243 KTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NN 299
Query: 340 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 161
STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EK
Sbjct: 300 GSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEK 359
Query: 160 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 50
INLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 360 INLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z93383-7|CAB07621.1| 285|Caenorhabditis elegans Hypothetical
protein F54B8.8 protein.
Length = 285
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 320 QVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERH 463
+V++ I + IL V ++ +T+ FLV V+ +F Y+ RH
Sbjct: 78 KVVIKNLIFLLIWPILLVGTVRSTLTFLVTMDRVIGSFFPIFYYNHRH 125
>U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical
protein ZK682.5 protein.
Length = 575
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 153 SNSLTPRPSSVMVDSRRRLTRLHSWVHS 70
+NSLT PSS +V+ R LT L+ ++S
Sbjct: 195 TNSLTSIPSSALVNQRNTLTNLNLGLNS 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,471,553
Number of Sequences: 27780
Number of extensions: 271435
Number of successful extensions: 725
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -