Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326E05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    29   0.42 
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    29   0.42 
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   3.9  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   5.2  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   5.2  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   6.8  

>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +2

Query: 143 KRSDPQLDKCVLDAVETMRPRLKTGIPEVNIPPLDPFMVPTLKLDRTAPNLRLKATIKQT 322
           +RS P+ ++C+L   + +RP +     +V IP         +  D T PN+++  T++  
Sbjct: 331 ERSAPK-NQCLLSDWKQVRPDVYELSDQVRIPGCHDMAANIVHFDTTYPNIKITHTVRTV 389

Query: 323 KAF 331
             F
Sbjct: 390 LRF 392


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
 Frame = -2

Query: 307 GFQSQVWSSPVQFQ-RWHHEGV*R--RNVDFRNARLQTWPHCLDGVQH 173
           GF ++V  S ++F+  W + G+ R  ++ DFR+ + +T  +CL G++H
Sbjct: 63  GFPNKV--SALKFEWNWQNLGISRYTKDCDFRSKKQKTIMYCLKGLKH 108


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 154 STARQVRAGRRRDNEATSEDGHS*SQHSAFRPLHGANVETGQDCSKPAIESHD 312
           S++R+V +   RD+        S  +HS  R L G++  T  D S  +I S+D
Sbjct: 195 SSSRRVYSVDLRDSGDVQLPNQSTFRHSVNRDLLGSSSTTSHDRSSGSIYSND 247


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 199 PHCLDGVQHAL 167
           P CLDGVQH L
Sbjct: 434 PECLDGVQHVL 444


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 458 NSRATHVVIRNHHQLWENHF 399
           NS   HV+ R  H + ENHF
Sbjct: 538 NSYGNHVLNRIQHDILENHF 557


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 387 VYLLFKLIFNFSILKLLPPNALVCLIVAFNRRFGAVLSSF 268
           +Y+ F  ++N   ++ L P+  VCL++ F   +   + SF
Sbjct: 2   IYINFYELYNIKNIRPLIPSFHVCLLIMFLILYSQEILSF 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,403
Number of Sequences: 5004
Number of extensions: 39143
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)