Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326E05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1006 + 23260903-23261354,23264532-23264889,23264949-23265575     29   2.3  
03_06_0324 + 33133081-33133260,33133381-33133481,33133665-331337...    29   2.3  
09_06_0071 - 20675501-20675830,20676120-20676286,20676472-206766...    29   3.0  
06_01_0785 - 5873244-5873357,5873458-5873562,5874333-5874424,587...    28   5.2  
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852     28   5.2  
04_04_0396 + 24915880-24916222,24916318-24916577,24916689-249167...    27   9.1  

>07_03_1006 + 23260903-23261354,23264532-23264889,23264949-23265575
          Length = 478

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 161 LDKCVLDAVETMRPRLKTGIPEVNIPPLDPFMVPTLKLDRT 283
           LDKC LDA +T R   +  +P  +   L P++      DR+
Sbjct: 63  LDKCGLDASDTDRATFRAKVPVASYDDLKPYVKRIANGDRS 103


>03_06_0324 +
           33133081-33133260,33133381-33133481,33133665-33133797,
           33133936-33134027,33134309-33134408,33134505-33134577,
           33134659-33134779,33135418-33135537,33136089-33136179,
           33136288-33136305
          Length = 342

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 145 LALWKEVGRHSPINRDRI*N*KNKLSHCWYCAIVLYCCYC*SLVPIRH 2
           L L K+V   SPI+       +  L +CW   + + C YC  ++   H
Sbjct: 285 LHLSKKVHLGSPISSIEFCPTERFLKYCWIVTVAIVCLYCRVVISTSH 332


>09_06_0071 -
           20675501-20675830,20676120-20676286,20676472-20676619,
           20676768-20677205,20677667-20677741,20678000-20678283,
           20678940-20679159
          Length = 553

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 71  EFVFLILYAVSVNGRVTPDFFPQC-KRSDPQLDKCVLDAVETM 196
           +FVF++ +      R+    +PQC K  DP LD    +  ETM
Sbjct: 168 QFVFIVAFFSHYQYRLLRMIYPQCSKVGDPDLDHNCWERPETM 210


>06_01_0785 -
           5873244-5873357,5873458-5873562,5874333-5874424,
           5874525-5874594,5875080-5875202,5875287-5875372,
           5875547-5875648,5875874-5876096,5876217-5876282,
           5876407-5876497,5876574-5876701,5877734-5877749,
           5878171-5878318,5878440-5878511,5878586-5878690,
           5879122-5879291,5880093-5880424
          Length = 680

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 386 TGGD*NGFPKVDGDCGLRRAWL*NSHPGHKWKRKTKRRIHWNNSG 520
           +G D   FP++D +   R AW+  SHP   W +      +++ SG
Sbjct: 233 SGNDFYAFPRIDHN-NKRMAWIEWSHPNMPWDKSELWVGYFSESG 276


>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
          Length = 764

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 11  RHEALTITAVKHNSTVPTMREFVFLILYAVSVNGRVTP 124
           RH+ L  + V++  +   + E  +L++  +S+NG   P
Sbjct: 664 RHQELLDSQVRNEMSAEMLEEITYLLMRCISMNGEERP 701


>04_04_0396 +
           24915880-24916222,24916318-24916577,24916689-24916784,
           24916889-24917059,24917262-24917975
          Length = 527

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 419 DGDCGLRRAWL*NSHPGHKWKRKTKRRIHWN 511
           D D  LR A    S PG  W R+  R +HW+
Sbjct: 8   DDDAALREAGGGASFPGG-WLRRLSRELHWS 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,532,355
Number of Sequences: 37544
Number of extensions: 273268
Number of successful extensions: 708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)