Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326E05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    28   3.5  
AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine re...    28   3.5  
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 111 PLTETAYKIKKTNSLIVGTVLLCFTAVIVKAS 16
           P+T+  YK+ K  +L++  V++C    ++  S
Sbjct: 71  PVTDHFYKMIKATNLLIAVVIICIIFTVISTS 102


>AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform b protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 111 PLTETAYKIKKTNSLIVGTVLLCFTAVIVKAS 16
           P+T+  YK+ K  +L++  V++C    ++  S
Sbjct: 71  PVTDHFYKMIKATNLLIAVVIICIIFTVISTS 102


>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
            protein C26G2.1 protein.
          Length = 1270

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 310  RGFQSQVWSSPVQFQRWHHEGV*RRNVDFRNARLQTW-PHCL 188
            RGF S  W+SPV F   + +GV    +     +L TW P+ L
Sbjct: 1049 RGFASS-WTSPVIFATLNEDGVNVAMIRNEKLKLTTWIPYIL 1089


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,336,022
Number of Sequences: 27780
Number of extensions: 225970
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)