Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326E04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 157 7e-40
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo... 151 8e-38
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 1.7
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 26 3.0
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 26 3.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 5.2
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 9.0
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 25 9.0
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 157 bits (382), Expect = 7e-40
Identities = 77/137 (56%), Positives = 99/137 (72%)
Frame = +2
Query: 2 NIVAVGAGFVDGLGYGDNTKAAVIRLGLMEMIKFVDVFYPGSKLSTFFESCGVADLITTC 181
NIVAV AG +DGL GDNTK+AV+R+GL+EM KF +F+ L+ ESCG+ADLITTC
Sbjct: 237 NIVAVAAGIIDGLELGDNTKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTC 296
Query: 182 YGGRNRRVAEAFVKTGRSIKELEDEMLNGQKLQGPITAEEVNHMLANKNMENKFPLFTAV 361
GGRN + A AFVKTG+ + +E E+L+GQKLQG TA+EV L N+N ++FPLFTAV
Sbjct: 297 LGGRNHKCAVAFVKTGKPMHVVEQELLDGQKLQGAATAKEVYEFLDNQNKVSEFPLFTAV 356
Query: 362 FRICRGELKPNDFIDCI 412
+RI L PN ++ I
Sbjct: 357 YRIVYEGLPPNKLLEAI 373
>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 385
Score = 151 bits (365), Expect = 8e-38
Identities = 69/134 (51%), Positives = 93/134 (69%)
Frame = +2
Query: 2 NIVAVGAGFVDGLGYGDNTKAAVIRLGLMEMIKFVDVFYPGSKLSTFFESCGVADLITTC 181
N+VA+ GF DGL +G NTKAA++R GL+EM KF F+ + +SCG+ADL+T+C
Sbjct: 233 NVVAMAVGFADGLEWGGNTKAAIMRRGLLEMQKFATTFFDSDPRTMVEQSCGIADLVTSC 292
Query: 182 YGGRNRRVAEAFVKTGRSIKELEDEMLNGQKLQGPITAEEVNHMLANKNMENKFPLFTAV 361
GGRN R AEAFVKTG+S++ LE E+L GQ LQG T+++V+ L K+M FPLFTAV
Sbjct: 293 LGGRNNRCAEAFVKTGKSLETLEKELLGGQLLQGAATSKDVHEFLLTKDMVKDFPLFTAV 352
Query: 362 FRICRGELKPNDFI 403
+ I ++ P D I
Sbjct: 353 YNISYEDMDPKDLI 366
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 306 TICSLIKIWKTSSLCSLRC 362
TIC L+ IW+ S C LRC
Sbjct: 1053 TICMLLSIWEAMS-CPLRC 1070
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 302 VNHMLANKNMENKFPLFTAVF 364
VNH L KN+ +KFP +V+
Sbjct: 284 VNHQLPTKNLLSKFPNLASVY 304
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 331 GKQVPFVHCGVPHLSRRTQTER 396
GKQ P+ C V + +RTQT++
Sbjct: 26 GKQSPYCVCRVGEVVKRTQTDK 47
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 147 SKNVLSLLPG*NTSTNLIISMRPSLMTAAFVLSP*PRPSTKPAPTA 10
+K ++ P ++ N I+S +L V +P P P +PAP A
Sbjct: 862 TKPASAITPETKSTVNQIMSGGEALAAPVAVPAPIPAPVAEPAPPA 907
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 358 GVPHLSRRTQTERLY*LHSQSPGTHETALGQMFTV 462
G +S + T +L+ LH +P T L Q+F +
Sbjct: 85 GAIPISHKGTTTKLHILHPPNPATRSYMLTQLFQI 119
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 24.6 bits (51), Expect = 9.0
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Frame = +2
Query: 110 VFYPGSKLSTFFESCGVADLITTC-YGGRNRRVAEAFVKTGRSIKELEDEMLNGQKLQGP 286
+ + S +STF + + L C YG R + + V G SI + L G
Sbjct: 85 IVFAASAISTFLQMAMMVSLGVICDYGNNRRYILFSCVIIG-SISGIILSWSPSSFLLGK 143
Query: 287 IT---AEEVNHMLANKNMENKFPLFTAVFRICRGEL 385
I ++N +++ ++ P+F + I RG +
Sbjct: 144 IVFLILVDLNFIISQSCYDSFLPIFLRFYPITRGPI 179
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/31 (25%), Positives = 20/31 (64%)
Frame = +2
Query: 23 GFVDGLGYGDNTKAAVIRLGLMEMIKFVDVF 115
GFV GLG+ +T+ +++ + ++ +K ++
Sbjct: 209 GFVFGLGFDTSTEVSLLGIATLQALKGTSIW 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,190
Number of Sequences: 5004
Number of extensions: 41916
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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