Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326E04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562... 156 1e-38
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726... 31 0.42
03_05_0590 - 25922905-25923008,25923637-25924594 30 1.3
08_01_0447 + 3954917-3954919,3954965-3955217,3955763-3956126,395... 27 6.9
06_03_0528 + 21782567-21782651,21783355-21783563,21784095-217842... 27 6.9
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360... 27 6.9
02_03_0258 - 16930027-16930485,16930686-16930991 27 6.9
10_08_0009 + 14075929-14076789 27 9.1
03_03_0075 + 14280297-14280830 27 9.1
>01_07_0341 -
42855667-42855849,42855933-42855981,42856165-42856219,
42856290-42856410,42856495-42856532,42856612-42856675,
42856778-42856885,42857066-42857187,42857544-42857616,
42857700-42857776,42858521-42858632
Length = 333
Score = 156 bits (378), Expect = 1e-38
Identities = 77/137 (56%), Positives = 96/137 (70%), Gaps = 2/137 (1%)
Frame = +2
Query: 2 NIVAVGAGFVDGLGYGDNTKAAVIRLGLMEMIKFVDVFYPGSKLSTFFESCGVADLITTC 181
N+VA+ AG VDGL G+NTKAA++R+GL EM F + P + +TFFESCGVADLITTC
Sbjct: 179 NVVAIAAGLVDGLDMGNNTKAAIMRIGLREMRAFSKLLSPTVRDNTFFESCGVADLITTC 238
Query: 182 YGGRNRRVAEAFVKTG--RSIKELEDEMLNGQKLQGPITAEEVNHMLANKNMENKFPLFT 355
GGRNRRVAEAF + G RS ELE EML+GQKLQG TA+EV +L + + FPL +
Sbjct: 239 LGGRNRRVAEAFARNGGKRSFDELEAEMLHGQKLQGVSTAKEVYEVLTYRGWQELFPLLS 298
Query: 356 AVFRICRGELKPNDFID 406
V IC G+L P ++
Sbjct: 299 TVHEICIGQLPPTSIVE 315
>07_01_0874 -
7261191-7261274,7262291-7262440,7262769-7262916,
7263136-7263259,7263452-7263653,7263743-7263848,
7263979-7264442
Length = 425
Score = 31.5 bits (68), Expect = 0.42
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 2 NIVAVGAGFVDGLGYGDNTKAAVIRLGLMEM 94
N++A+ AG V+G+ G+N AA++ G E+
Sbjct: 312 NVLAIAAGIVEGMHLGNNCMAALVAQGCSEI 342
>03_05_0590 - 25922905-25923008,25923637-25924594
Length = 353
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = +2
Query: 251 DEMLNGQKLQGPITAEEVNHMLANKNMENKFPLFTAVFRICRGELKPNDFIDCIR 415
DE+L G + P A NK +PL AVF +LK DFI R
Sbjct: 24 DEVLFGSEYTFPANAPTA---FTNKQSGRPYPLSAAVFLAQHNDLKHTDFIQAAR 75
>08_01_0447 +
3954917-3954919,3954965-3955217,3955763-3956126,
3956217-3956435,3957734-3957869,3958261-3958362,
3958439-3958690,3958796-3959092
Length = 541
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +2
Query: 230 RSIKELEDEMLNGQKLQGPITAEEVNHMLANKNMENKFPLFTAVFRICRGELKPNDFIDC 409
R ++E E+ P T EE H+ ++ F L A F + G+L + +DC
Sbjct: 362 RLVQEFSQEIKWRDDHYIPKTIEE--HLELSRKTVGAFELACASF-VGMGDLVAKETLDC 418
Query: 410 IRSHPEHMK 436
+ ++PE +K
Sbjct: 419 LLTYPELLK 427
>06_03_0528 +
21782567-21782651,21783355-21783563,21784095-21784232,
21784520-21784734,21784813-21784967,21785010-21785071,
21785832-21785834
Length = 288
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = -2
Query: 148 LEERAQLASRVEHINEFDHLHETESDDSSLCVVTVAEAVHETRTHCH 8
LE+R + VE IN HL T+SD + VVT + E HCH
Sbjct: 147 LEQRLEELETVEDIN---HLIFTDSD---IAVVTDLGHIFEMYPHCH 187
>03_01_0465 +
3598815-3598972,3599949-3600711,3601073-3601159,
3601263-3601346,3601428-3601514,3601608-3601694,
3602239-3602292,3602380-3602471,3602564-3602678,
3602763-3602913,3603010-3603155
Length = 607
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 451 FDQGQFHVFRVTANAINKVVRFEFSATDAEHRS 353
F+ G+ + TA+ I +RFE A D+E RS
Sbjct: 176 FEVGRSRTYTPTADDIGHALRFECVAVDSETRS 208
>02_03_0258 - 16930027-16930485,16930686-16930991
Length = 254
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 4 HCGSGCGFRGRPRLR*QHKGCCHQTRSHGD 93
+CG G G+ GRPRLR Q G + GD
Sbjct: 37 NCGGGGGW-GRPRLRRQRMGTTSAPAATGD 65
>10_08_0009 + 14075929-14076789
Length = 286
Score = 27.1 bits (57), Expect = 9.1
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Frame = +2
Query: 41 GYGDNTKAAVIRLGLMEMIKFVDVFYPGSKLSTFFESCGVADLITTCYGGRNRRVAEAFV 220
GYG NT A + E YPGSKL F++ V L++ G + +
Sbjct: 198 GYGANTDVATYVMFYDEQA----ANYPGSKLLASFKTGNVTGLLSPEQGIAGAKELQRQG 253
Query: 221 K-TGRSIKELEDEMLNGQKLQGPITAEEV--NH 310
K G I + M++ K + A+E+ NH
Sbjct: 254 KLPGLFIWSADSSMVSSYKFEYETKAQEIVANH 286
>03_03_0075 + 14280297-14280830
Length = 177
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 174 RPATGAETDELPKRLLKRDGQ-*KSWK 251
RP T + EL + LLKRDG +SWK
Sbjct: 108 RPFTADDDAELARLLLKRDGDGERSWK 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,147,054
Number of Sequences: 37544
Number of extensions: 314370
Number of successful extensions: 876
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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