Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS326E03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 234 7e-63
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 223 1e-59
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 121 6e-29
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 105 5e-24
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.24
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 1.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.2
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 3.0
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 3.0
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 26 3.9
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 25 6.8
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 25 9.0
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 9.0
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 234 bits (572), Expect = 7e-63
Identities = 100/139 (71%), Positives = 118/139 (84%)
Frame = +1
Query: 67 MRXCISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 246
MR IS+H+GQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 247 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 426
+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 427 RIRKLADQCTGLQGFLVFH 483
+IR++AD C+GLQGFLVFH
Sbjct: 121 KIRRIADNCSGLQGFLVFH 139
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 223 bits (546), Expect = 1e-59
Identities = 100/144 (69%), Positives = 120/144 (83%), Gaps = 5/144 (3%)
Frame = +1
Query: 67 MRXCISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSD-----KTLGGGDDSFNTFFSE 231
MR ISVH+GQAGVQIGNACWELYCLEHGI PDG P++ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 232 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 411
TG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Query: 412 DVVLDRIRKLADQCTGLQGFLVFH 483
D VL+RIR++AD C+GLQGFLVFH
Sbjct: 120 DSVLERIRRMADNCSGLQGFLVFH 143
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 121 bits (292), Expect = 6e-29
Identities = 58/139 (41%), Positives = 80/139 (57%)
Frame = +1
Query: 67 MRXCISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 246
MR + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHG--TSEAQHERLNVYFNEAAGGK 58
Query: 247 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 426
+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118
Query: 427 RIRKLADQCTGLQGFLVFH 483
+R+ A+ C LQGF + H
Sbjct: 119 VVRREAEACDALQGFQLTH 137
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 105 bits (251), Expect = 5e-24
Identities = 54/140 (38%), Positives = 83/140 (59%), Gaps = 2/140 (1%)
Frame = +1
Query: 70 RXCISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGKH 249
R I++ GQ G QIG+ W+ CLEHGI PDG + S T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 250 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDVVL 423
+PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 424 DRIRKLADQCTGLQGFLVFH 483
D I + AD L+GF + H
Sbjct: 120 DMIDREADGSDSLEGFSLLH 139
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.9 bits (64), Expect = 0.24
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Frame = +2
Query: 113 LATPAGSCTASSMESSLMV-RCRQIRPSAVETTPLTRSSARPARESTCHELSLLIWNQL* 289
++T TAS SS+ V ++P + +TP++ SS+ + +ST S ++ +++
Sbjct: 452 ISTSVKQPTASVASSSVSVPSSSSVQPQS--STPISSSSSASSPQSTLSTSSEVV-SEVS 508
Query: 290 STRFVPALTV---NCSTPSSSSLAKRMLPITMPEDTIPLARRS 409
ST + + + STPSSS ++ M + +IP + S
Sbjct: 509 STLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSS 551
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 113 LATPAGSCTASSMESSLMVRCRQIRPSAVETTPLTRSS 226
++TPA + S+ + + PS+ +TTP + SS
Sbjct: 618 VSTPASNSNTGSLNGTSSFNVNSVGPSSSQTTPTSSSS 655
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 2.2
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +2
Query: 143 SSMESSLMVRCRQIRPSAVETTPLTRSSARPARESTCHELSLLIWNQL*STRFVPALTVN 322
SS SSL +PS T+ T SSA P S+ S L + + S+ P+ + +
Sbjct: 172 SSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS----SYLSSSSVVSSSSSPS-SSS 226
Query: 323 CSTPSSSSLAKRMLPIT 373
ST +SSSL+ +P T
Sbjct: 227 SSTLTSSSLSTSSIPST 243
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 2.2
Identities = 20/91 (21%), Positives = 39/91 (42%)
Frame = +2
Query: 74 NASPFTSVKPAYRLATPAGSCTASSMESSLMVRCRQIRPSAVETTPLTRSSARPARESTC 253
N++ TSV + SS+ S+ + ++ +TPL+ ++ A ++
Sbjct: 395 NSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLSSVNSTTATSASS 454
Query: 254 HELSLLIWNQL*STRFVPALTVNCSTPSSSS 346
LS + S P +VN +T +S+S
Sbjct: 455 TPLSSVNSTTATSASSTPLTSVNSTTATSAS 485
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 188 PSAVETTPLTRSSARP--ARESTCHELSLLIWNQL*STRFVPALTVNCSTPSSSSLAKRM 361
PS E P + P + S+ LSLL + L + P+ N S P S +R+
Sbjct: 120 PSTPELPPSSSPLLPPNGSESSSPIPLSLLSTSSLQQRKITPSNLSNTSKPMDSKQLERL 179
Query: 362 LPI 370
+P+
Sbjct: 180 IPV 182
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +2
Query: 74 NASPFTSVKPAYRLATPAGSCTASSMESSLMVRCRQIRPSAVETTPLTRSSARPAREST 250
N F+ + + + T +S ++ + ++PS VE T +R++A+ EST
Sbjct: 8 NTPKFSYARALASSQSNKSNSTKASENNTATAEKQAVKPSGVEPTNTSRANAQKKTEST 66
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 511 IRSRFHLRTSETRGNPEALCIGPPAS*SCPKLRLRSPCQW 392
++ RF + + T N E I PP + PK RL S +W
Sbjct: 42 LKKRF-IGSKATTSNSEQKEISPPVTSGAPKHRLFSKDEW 80
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 315 VSAGTNLVDYSWFQINKDSSWHVLSR 238
+SAGT+ + + KD++WH ++R
Sbjct: 386 LSAGTDQTTRLFARFKKDNAWHEMAR 411
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +3
Query: 375 CPRTLYHWQGDRRRSFGQDQEAGGPMHRASGFP 473
C L W+ +RR G + ++ P H ++ P
Sbjct: 50 CSAVLAEWKRRKRRLKGSNSDSDSPHHASNPHP 82
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 24.6 bits (51), Expect = 9.0
Identities = 7/24 (29%), Positives = 17/24 (70%)
Frame = +1
Query: 370 NYARGHYTIGKEIVDVVLDRIRKL 441
N+ + HY++ E+ DV++ ++ +L
Sbjct: 64 NHKKPHYSVETEVKDVIISKVVEL 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,630
Number of Sequences: 5004
Number of extensions: 41412
Number of successful extensions: 117
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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