Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326E02f
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    30   0.18 
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    29   0.53 
SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom...    27   1.6  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    26   3.8  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   8.7  

>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +2

Query: 332 LDSMGCFRDIGVFIDVSSGPGSTPEGLEVTFQVKELSRVIGGINTTVSENEGNL 493
           L +   +    + ID +S   S  + L+VT QVKE  R+     T V   EGN+
Sbjct: 95  LMAFNVYETANIKIDRASSSVSGDDDLDVTIQVKEKPRLYVETGTDVGNVEGNV 148


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 259 ILYNVIFCTIQTINVHSIN-TSSYSI*FDGGFWYWFLAHFDWLF 131
           I+   I   + T N+++ + T+++   F+ G +YW      WLF
Sbjct: 220 IIVGTILLLVATYNIYTYHLTNTHHNGFECGIYYWHFCDVVWLF 263


>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 152 EEPIPKPTIKLDGVRARVDRVHVD 223
           +EP PK  + +D +  +V R+HVD
Sbjct: 252 QEPKPKKNVDVDIIGNKVGRIHVD 275


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 417 TSSPSGVDPGPDDTSMNTPMSRKQPIE 337
           TSS S   P P D S  T ++ KQ IE
Sbjct: 183 TSSKSLSPPAPQDESQGTEINLKQKIE 209


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 152 RPFRLALQKQTDRRQSRQYRAGLPSRGQYPFWF 54
           RP  LAL+ Q+  R++    +G   +G    WF
Sbjct: 471 RPNSLALKNQSSHRRNSSTSSGETGKGPKIVWF 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,117,251
Number of Sequences: 5004
Number of extensions: 41575
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)