Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326E02f
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0952 - 21770449-21770718,21771032-21771277,21771677-217719...    29   2.9  
05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682...    29   2.9  
08_02_0316 + 15690452-15690555,15690871-15690965,15693707-156937...    27   6.6  
03_03_0204 + 15436660-15437244,15437355-15437632,15438792-154390...    27   6.6  
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688...    27   8.8  
08_02_1047 - 23927822-23928112,23928736-23928981,23929119-239293...    27   8.8  
03_01_0047 + 391689-392738,392832-392999,393091-393195,393529-39...    27   8.8  

>10_08_0952 -
           21770449-21770718,21771032-21771277,21771677-21771953,
           21772241-21772518,21773451-21773960
          Length = 526

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 326 RALDSMGCFRDIGVFIDVSSGPGSTPEGLEVTFQVKELSRVIGGINTTVSEN 481
           R+ D++ C  ++  F DV    GS P G+ +    + ++  IGG  T   ++
Sbjct: 431 RSFDAIRC--ELRAFFDVHEQEGSYPGGIHLEMTGQNVTECIGGSKTVTLDD 480


>05_04_0186 +
           18866762-18866949,18867207-18867345,18868068-18868295,
           18869023-18869081,18869411-18869482,18870239-18870287,
           18870431-18870661,18872018-18872187,18872274-18872478,
           18872826-18873494,18873592-18873819,18873901-18874689
          Length = 1008

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 77  RGQYPFWFFNCFKC 36
           RG Y FWFF  F+C
Sbjct: 94  RGHYTFWFFTTFQC 107


>08_02_0316 +
           15690452-15690555,15690871-15690965,15693707-15693783,
           15693854-15693908,15695158-15695227,15695388-15695457,
           15696047-15696340
          Length = 254

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 436 LFNLKRNLQSFRCGSRSGRYIYEHT 362
           LF+LK +LQ +R G +SG+ + E +
Sbjct: 84  LFHLKSHLQKYRLGKQSGKEMAEQS 108


>03_03_0204 +
           15436660-15437244,15437355-15437632,15438792-15439068,
           15439160-15439405,15440853-15441134
          Length = 555

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 326 RALDSMGCFRDIGVFIDVSSGPGSTPEGLEVTFQVKELSRVIGGINTTVSENEGN 490
           R  DS+    ++  F DV    GS P G+ +    + ++  IGG  T   ++ G+
Sbjct: 456 RPFDSI--LAEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGD 508


>09_03_0047 -
           11867302-11867356,11867461-11868032,11868485-11868873,
           11869018-11869331,11871028-11871382,11872004-11872076
          Length = 585

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 356 DIGVFIDVSSGPGSTPEGLEVTFQVKELSRVIGGINT 466
           + GVFI+ SSG G +PE +     +  +S  IG ++T
Sbjct: 349 EAGVFIEASSGFGQSPESIHCHHGI--MSAEIGQLST 383


>08_02_1047 -
           23927822-23928112,23928736-23928981,23929119-23929395,
           23929522-23929799,23931147-23931572
          Length = 505

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 356 DIGVFIDVSSGPGSTPEGLEVTFQVKELSRVIGGINTTVSENEGN 490
           ++  F DV    GS P G+ +    + ++  IGG  T   ++ G+
Sbjct: 411 EVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGS 455


>03_01_0047 +
           391689-392738,392832-392999,393091-393195,393529-393611,
           393899-394364
          Length = 623

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 433 RAIPRHRWNKHNSQRERGQFGF 498
           RA+ + R N H++  +RG+FGF
Sbjct: 571 RALRKRRRNAHDAAGQRGKFGF 592


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,979,849
Number of Sequences: 37544
Number of extensions: 280884
Number of successful extensions: 731
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)