Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326E02f
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    29   2.6  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    29   2.6  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    29   2.6  
Z73428-3|CAA97809.1|  247|Caenorhabditis elegans Hypothetical pr...    28   4.5  
X96636-1|CAA65441.1|  263|Caenorhabditis elegans vab-7 protein.        28   4.5  
AF003383-2|AAB54235.2|  344|Caenorhabditis elegans Hypothetical ...    28   4.5  

>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 226 TINVHSINTSSYSI*FDGGFW 164
           TIN HSIN  ++S  FD  +W
Sbjct: 34  TINGHSINKENFSFNFDHSYW 54


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 226 TINVHSINTSSYSI*FDGGFW 164
           TIN HSIN  ++S  FD  +W
Sbjct: 34  TINGHSINKENFSFNFDHSYW 54


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 226 TINVHSINTSSYSI*FDGGFW 164
           TIN HSIN  ++S  FD  +W
Sbjct: 34  TINGHSINKENFSFNFDHSYW 54


>Z73428-3|CAA97809.1|  247|Caenorhabditis elegans Hypothetical
           protein M142.4 protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -2

Query: 486 PSFSLTVVFIPPMTRDSSLT*NVTSSPSGVDPGPDDTS 373
           PS + ++ F+PP+   S L+ N T SPS   P  DD+S
Sbjct: 180 PSAAGSLPFLPPLGFPSFLSQNSTKSPS--SPHSDDSS 215


>X96636-1|CAA65441.1|  263|Caenorhabditis elegans vab-7 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -2

Query: 486 PSFSLTVVFIPPMTRDSSLT*NVTSSPSGVDPGPDDTS 373
           PS + ++ F+PP+   S L+ N T SPS   P  DD+S
Sbjct: 196 PSAAGSLPFLPPLGFPSFLSQNSTKSPS--SPHSDDSS 231


>AF003383-2|AAB54235.2|  344|Caenorhabditis elegans Hypothetical
           protein ZC250.3 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 148 HFDWLFKNKQTAARVANIVLVCLRVDSTHFGFLI 47
           ++DW   N+Q A R  + V+VCL V ++  G LI
Sbjct: 227 YYDWEKINEQGAFRGWDFVVVCLTVTNSVGGILI 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,838,933
Number of Sequences: 27780
Number of extensions: 236516
Number of successful extensions: 722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)