Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326E02f
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.4  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   4.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.8  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -2

Query: 453 PMTRDSSLT*NVTSSPSGVDPGPDDTSMNTPMSRKQPIESRARRTL*ALTITSSKSV 283
           P +RD S T N + +    D GP+   +N   +  Q I+    R L   + T+S  V
Sbjct: 85  PDSRDKSNTSNTSKTIILSDKGPEGIQINA--TELQKIKLEIHRDLPGKSTTTSVEV 139


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 431 KELSRVIGGINTTVSE 478
           K  SR++GG NT ++E
Sbjct: 156 KNPSRIVGGTNTGINE 171


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 453 PMTRDSSLT*NVTSSPSGVDPGPDDTSMNTPMSRKQPIE 337
           P +RD S T N + +    D GP+   +N    +K  +E
Sbjct: 85  PDSRDRSNTSNTSKTVILSDKGPEGIQINATELQKIKLE 123


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 510 IFXPKTKLPSFSLTVVFI 457
           +F P  +LP+  LT VF+
Sbjct: 63  LFTPGQELPARGLTAVFL 80


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 140 VEMGEEPIPKPTIKLDGVRARVDRV 214
           +    E +P PT+K DG    V ++
Sbjct: 192 IHRSPELVPMPTLKGDGRHMEVIKI 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,158
Number of Sequences: 438
Number of extensions: 2932
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)