Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326E01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   0.97 
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    28   0.97 
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    27   1.3  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   5.2  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    25   5.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   6.8  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.8  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   9.0  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 110  FLKYNIFYTRVYLYLDVPSCEL-RIYNYSIFL 18
            FLK  + +  +Y++ +VP C++ R Y Y+  L
Sbjct: 2346 FLKLVVLWKNIYVWTNVPDCDISRFYCYTKML 2377


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = +2

Query: 38  KSLVRTKERLGIDKLEYKIYYILEILCNFILTKHF---QFHSFYKQY-KLTSGKVQKLFY 205
           KS+   KE LG+ +  YK Y++L +   F  +  F   QF+ F   Y  + +  +  L Y
Sbjct: 256 KSMGWKKELLGLVQTLYKEYWVLLLFPMFFSSNWFTTYQFNDFNLAYFNIRTRSLNNLLY 315

Query: 206 HLATPRKNGVGRVYL 250
             A    + V  ++L
Sbjct: 316 WFAQIMGSAVAALFL 330


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 83  RVYLYLDVPSCELRIYNYSI 24
           ++YLY   PSC +R+Y+  I
Sbjct: 242 QIYLYFSYPSCLVRVYSIGI 261


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 291 FRLLSL-YERYDRF*GISTITYSFFLVFFLFTLCSNF 398
           FR L L Y  +  F  I    Y FF  FF F+ C  F
Sbjct: 56  FRRLKLPYHHHHTF-TIEAFFYWFFFFFFFFSHCRRF 91


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = -3

Query: 519 D*IPSLHKSILEIPQNISNFKTSSS------IF*IQSTKKRKIIYTKNSNIR*KEKKL 364
           D IPSL  +I      ISN KT  S      ++ ++    R+I + K SN++  EK L
Sbjct: 502 DRIPSLKFAIRAAETYISNLKTPRSLISRKAVWRMRPASVRQINFLKKSNLKLDEKLL 559


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 269  QP*HLILSKLFQLHFFVVLPSDRTTFVLCHLLIYIV 162
            QP   ++ K+ +L+FF         F LCHLL++++
Sbjct: 1760 QPSRELICKMTELNFFAA------DFFLCHLLLFLM 1789


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 89  KIYYILEILC-NFILTKHFQFHSFYKQYKLTSGKVQ 193
           +I Y++ + C +FI+T   +F   Y  YK T   V+
Sbjct: 62  RIVYLIIVACGSFIITGGIEFAIAYGMYKKTETSVR 97


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 144  SSIPFTNNIN*QVAKYKSCSITWQHHEKME 233
            SS  F NN+N  + +YK  S   Q  EK E
Sbjct: 1237 SSARFFNNLNEIILEYKKASTVNQKMEKEE 1266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,864,080
Number of Sequences: 5004
Number of extensions: 34240
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)