Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326D10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0302 + 16459742-16459795,16459894-16460067,16460160-164602...    28   5.2  
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116...    27   6.9  

>07_03_0302 +
           16459742-16459795,16459894-16460067,16460160-16460233,
           16460593-16460626,16460772-16460830,16461039-16461153,
           16461251-16461288,16461374-16461471,16461590-16461645,
           16461957-16462239,16462532-16462647,16463278-16463334,
           16463686-16463751,16464020-16464094,16464286-16464324
          Length = 445

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 199 LHLKK*TKTNNLIDIVECQLDSFLFVFVEKR 107
           L LKK    N+L+D+ +  L++ LF  +EKR
Sbjct: 87  LELKKLLVDNSLLDVSQSDLEANLFKLMEKR 117


>09_06_0076 +
           20710482-20710670,20711313-20711547,20711664-20711689,
           20712000-20712293,20712603-20712728,20712827-20712896,
           20712992-20713182,20713394-20713519,20713878-20714279,
           20714364-20714758,20714861-20715315,20715403-20715524,
           20715653-20715693,20716026-20716129,20716363-20716576,
           20717667-20717780,20718576-20718612
          Length = 1046

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 84  LNVVYTFSRFSTKTNKKESN*HSTMSIRLFVFVYFFKCNI 203
           LN+ +  S +  + NK+    +ST+S+ + VF+ F+  NI
Sbjct: 231 LNIYHLLSIY--RHNKERKKWYSTLSLEIHVFILFYVPNI 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,227,613
Number of Sequences: 37544
Number of extensions: 127742
Number of successful extensions: 187
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)