Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326D03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    31   0.079
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.56 
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   5.2  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   5.2  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   6.8  

>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 31.5 bits (68), Expect = 0.079
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = +2

Query: 188 LLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREIIT 295
           +LNLP E++I+I  +LD  ++ +   TCK  +++++
Sbjct: 31  VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLS 66


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = -3

Query: 504  MLISVYVTSKVCRLFKWRTACMSLVFVKSCIPLSDRSFRL*ATALKKSVFKE----SAVD 337
            +L S+   +K  R FK      S + + SC     R+F L   ++K S  KE    S+VD
Sbjct: 3779 LLSSIETATKNMRTFKELAETSSFIEMSSCFSKVLRAFNLKFQSMKLSSLKEKLRSSSVD 3838

Query: 336  SMFRENFKFFTTPC 295
             M  +    F   C
Sbjct: 3839 KMSCQLLMLFLPVC 3852


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
 Frame = +2

Query: 152 NPTKVKMEESPALLNLPAEMIILIIKYLDTPTVYNIYNTCKPLREIITQG--VVKNLKF- 322
           NP  +    SP   + P+  + L   +      YN   T  P+     Q      N  F 
Sbjct: 301 NPLSISSRPSPCCPSTPSSAVTLSNGFDSQSNAYNNSGTGPPMLYKFPQRSYTAPNTSFN 360

Query: 323 SLNILSTADSLKTDFFKAVAYSLKDLSLSG 412
           S   +S+  SL T  F  V + +   SL+G
Sbjct: 361 SQRRMSSITSLPTASFCPVKHGVSPPSLAG 390


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 170 MEESPALLNLPAEMIILIIKYLDTPTVYNIYNTCKPL 280
           M +SP  L L  ++++ I  YLD   + ++  TCK L
Sbjct: 1   MAKSP-FLELSYDILLEISTYLDYKDIVHLSETCKSL 36


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -3

Query: 501 LISVYVTSKVCRLFKWRTACMSLVFVKSCIPLSDRSFRL*ATALKKSVFKESAVDSMFRE 322
           + S Y+ S+VC L  +  +    +F KS    S R+F + ++  K   F+  A+    + 
Sbjct: 1   MFSKYLQSRVCGLHSFTNSSAQQLFSKSIAHSSRRNFVISSSCTK---FRNVAIQRNAKR 57

Query: 321 NF 316
            F
Sbjct: 58  EF 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,199
Number of Sequences: 5004
Number of extensions: 37961
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)