Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326D03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.36 
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   5.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   5.8  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   5.8  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   5.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 221 IIKYLDTPTVYNIYNTCKP 277
           I+++ +TP V+   NTC+P
Sbjct: 97  IVQFRNTPEVHQAINTCQP 115


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 196 FTCRNDNINHKIFRHADRL 252
           +T + DNIN     H+DRL
Sbjct: 25  YTSKFDNINVDEILHSDRL 43


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 300 PCVIISLKGLQVLYIL*TVGVSKYFMINIIISAGKF 193
           PCV IS   +   Y+    G      INI++S   F
Sbjct: 245 PCVSISYLSVLAFYLPADSGEKIALCINILLSQTMF 280


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 196 FTCRNDNINHKIFRHADRL 252
           +T + DNIN     H+DRL
Sbjct: 25  YTSKFDNINVDEILHSDRL 43


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 196 FTCRNDNINHKIFRHADRL 252
           +T + DNIN     H+DRL
Sbjct: 25  YTSKFDNINVDEILHSDRL 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,434
Number of Sequences: 438
Number of extensions: 2458
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)