Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326D01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...   129   3e-31
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    40   3e-04
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    35   0.008
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    34   0.015
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    32   0.045
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.56 
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    28   0.73 
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    28   0.97 
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    27   2.2  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    27   2.2  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   2.2  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    26   3.9  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   3.9  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   6.8  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   6.8  
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    25   9.0  

>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score =  129 bits (311), Expect = 3e-31
 Identities = 66/154 (42%), Positives = 87/154 (56%), Gaps = 9/154 (5%)
 Frame = +3

Query: 81  LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGP---------ASXXXXXXXXXXGGIPK 233
           LP+ W  + SRS    Y+ N  T +S WE P            A+               
Sbjct: 6   LPKPWIVKISRSRNRPYFFNTETHESLWEPPAATDMAALKKFIANELQESVTPTEASNSP 65

Query: 234 EVRCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDC 413
           ++R SHLLVKH  SRRPSSW+EEHITR+KEEA  + + Y + +        +LA   SDC
Sbjct: 66  KIRASHLLVKHRESRRPSSWKEEHITRSKEEARKLAEHYEQLLKSGSVSMHDLAMKESDC 125

Query: 414 SSAKRDGDLGRFKKGQMQKPFEDVAFSLKIGQLS 515
           SSA+R G+LG F + +MQKPFED AF+LK G++S
Sbjct: 126 SSARRGGELGEFGRDEMQKPFEDAAFALKPGEIS 159


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +3

Query: 9   RKRKNLLAFPAQRTNDMASTQEEI--LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 173
           R+  N  A      + M+S +++   LP GWE R++ S G TYY++ +T+ + W +P
Sbjct: 212 RQTNNTSALSNSNAHIMSSFEDQYGRLPPGWE-RRADSLGRTYYVDHNTRTTTWTRP 267


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 34.7 bits (76), Expect = 0.008
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 81  LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGPAS 188
           LP GWE R + +T   Y+++ +TK + W+ P  P+S
Sbjct: 347 LPSGWEMRLT-NTARVYFVDHNTKTTTWDDPRLPSS 381


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 33.9 bits (74), Expect = 0.015
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = +3

Query: 222 GIPKEVRCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELAST 401
           GI  ++  S L +  S     S  + E +   K++A   +QE+R+K +    KF+EL + 
Sbjct: 38  GIQGQISASFLSLSRSIDDYDSMVQRELVPAKKKKATIRIQEFRQKHVQLLEKFDELKAH 97

Query: 402 YSDCSSAKRDGDL 440
             D + AK   +L
Sbjct: 98  VRDIAQAKNRKEL 110


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 32.3 bits (70), Expect = 0.045
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 81  LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 173
           LP GW   K+ S G+ YY N   KKS +++P
Sbjct: 5   LPPGWTEHKAPS-GIPYYWNAELKKSTYQRP 34


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 75  EILPEGWEARKSRSTGMTYYLNKHTK--KSQWEKP 173
           E LP GW A+     G  +Y+N+  +  + QWE P
Sbjct: 8   EGLPSGWVAQWDAEYGTYFYVNESAQNPQPQWEPP 42


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 93  WEARKSRSTGMTYYLNKHTKKSQWEKP 173
           W   K+  + + YY N  T+KS WEKP
Sbjct: 36  WHEVKTEDSRV-YYYNSVTRKSVWEKP 61


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 57  MASTQEEILPEGWEARKSRSTGMTYYLNKHTKKS--QWEKP 173
           MA    E LP GW A+        +Y+N+   K+  QWE P
Sbjct: 1   MAYQTREGLPNGWVAQWDERYKCYFYVNESDPKAKPQWECP 41


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 225 IPKEVRCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRK 359
           IP  + C HL+V H G+   +S   + I   K E  D LQ   +K
Sbjct: 120 IPASIHCDHLIVGHRGA---NSDIPDSIANNK-EIFDFLQSAAKK 160


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 375 AKFEELASTYSDCSSAKRDGDLGRFKK 455
           +KF  LAS Y   + A + G+LG F K
Sbjct: 295 SKFPNLASVYIPLTRALKSGNLGEFGK 321


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +3

Query: 288  SWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKK 455
            S REE IT  + E LD+ +       ++E+  +ELA    D +  ++D  L  FKK
Sbjct: 999  STREEKITSLRSELLDLNKRVEVLKEEKESSSKELAKQLED-AVREKDSALS-FKK 1052


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 300 EHITRTKEEALDILQEYRRKI-IDREAKFEELASTYSD 410
           E++   K +   ++ E  R   + REAKFE L ++ SD
Sbjct: 761 EYVLYKKSKGSQVITEKARSNELSREAKFENLVASLSD 798


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -3

Query: 441 PNPHHVL-LMNNQNMYLPALQI 379
           P P HV  +M+++N YL ALQ+
Sbjct: 532 PKPSHVKNIMHHENQYLQALQL 553


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +3

Query: 234 EVRCSHLLVKHSG---SRRPSSWREEHITRTKEEALDILQ-EYRRKIIDREAKFEE 389
           E R S L+ K SG   S  P+        +  ++  D +Q E+R+K++D E K+E+
Sbjct: 70  EGRLSSLVGKSSGYIESLAPAVQNRITALKGLQKDCDAIQYEFRQKMLDLETKYEK 125


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 339 LQEYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRF 449
           + EYR K+ D+E  + E+ + +       +D DL RF
Sbjct: 568 IDEYRNKLKDKEETYNEVMNAFQ-----YKDNDLRRF 599


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 378 KFEELASTYSDCSSAKRDGD 437
           KFE+ ++TYSD +  K D D
Sbjct: 39  KFEQFSNTYSDATFIKVDVD 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,094,997
Number of Sequences: 5004
Number of extensions: 38808
Number of successful extensions: 138
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)