Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326C11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    28   0.73 
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    27   2.2  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   6.8  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   9.0  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   9.0  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   9.0  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 291 VANECCLHPCTLEVLLSY 344
           V NEC +HPC +E ++++
Sbjct: 348 VCNECSMHPCDIEEIIAW 365


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 160 PTAVATWPVPWPISAATLVRKSAAKTGHGC 249
           P  V+    PW   AA + RK  A    GC
Sbjct: 154 PVGVSALITPWNFPAAMIARKGGAALAAGC 183


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 10/119 (8%)
 Frame = -3

Query: 426 KKNLYFQNDTSISTNYLTP*NMLSGFNSRKAEPLGCRGGGSTRWRRHSQSRRHPYGRMRT 247
           K  +Y +  T  ++++       S  +    E LG     S  ++ +S S   P    + 
Sbjct: 5   KSTIYRRQGTEPNSHFRRTVEEKSQLSGTNEESLGGHTLSSNAFKNNSSSIS-PSSSAKD 63

Query: 246 AMTSLRRAFP----DQRRCRDWPR-YGPGSDRSRYGPRFHSARP-----PSVERGGSQK 100
                +R FP       R R   R +     R R G +  S RP     PS  R GSQK
Sbjct: 64  PREQRKRTFPLNDTHSSRARQHERPFRSRKSRRRKGKKAFSPRPGSPPSPSFYRSGSQK 122


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 304  HSLATP-FSVTAPSLRPDADSHDQSSPRFS 218
            +S  +P +S T+PS  P + S+  +SP +S
Sbjct: 1606 YSATSPSYSPTSPSYSPTSPSYSPTSPSYS 1635


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -3

Query: 354 GFNS---RKAEPLGCRGGGSTRWRRHSQS 277
           GFNS   RK E    RGG ++  RRH  S
Sbjct: 81  GFNSVESRKKEQSDVRGGDTSYSRRHDDS 109


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 196 ISAATLVRKSAAKTGHGCPHPAVRMAP*LR 285
           IS+AT +  SAA+     P P  R  P LR
Sbjct: 628 ISSATTIHSSAAQDDTYLPSPTKRKMPLLR 657


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,362
Number of Sequences: 5004
Number of extensions: 36034
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)