Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS326C11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81495-5|CAB04059.1|  178|Caenorhabditis elegans Hypothetical pr...    31   0.50 
AF003140-2|ABR92610.1|  233|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U28741-3|AAA68327.2|  410|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z81495-5|CAB04059.1|  178|Caenorhabditis elegans Hypothetical
           protein F08G2.5 protein.
          Length = 178

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 405 NDTSISTNYLTP*NMLSGFNSRKAEPLGCRGGGSTRWRRHSQSRRHPYGRMRT 247
           +D+S S++     +  S  NS  + P  CR G    W +    R HPYGR  T
Sbjct: 101 DDSSSSSSSDDSVSSKSSTNSSDSSPCRCRDG-LAEWEQRHGRRWHPYGRNGT 152


>AF003140-2|ABR92610.1|  233|Caenorhabditis elegans Hypothetical
           protein C44E4.8 protein.
          Length = 233

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = -1

Query: 212 SVAAEIGQGTGQVATAVGTARVFTQHGHRQ*NEEDHKNRR 93
           S+A EI    GQ+ T  G  R  T     Q NEE H  RR
Sbjct: 191 SIAREIQLWCGQLFTLFGFHRRITGCDRAQSNEEAHGGRR 230


>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical protein
            W09G3.6 protein.
          Length = 1125

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 145  SLSTATVSRTRRITK-TAENFIVARQTTDCRWLLMNLIQLNKLPFRELL 2
            +LS  T+ +   I+  TAEN  +AR+     W  + +I   ++ F++LL
Sbjct: 943  ALSVFTIGKKATISIITAENQYIARRMAPADWCSIVVIGAREIGFKDLL 991


>U28741-3|AAA68327.2|  410|Caenorhabditis elegans Hypothetical
           protein F35D2.1 protein.
          Length = 410

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 328 SRVQGWRQHSLATPFSVTAPSLRPDADS 245
           SRV  WR H L + F   A SL P  D+
Sbjct: 111 SRVSHWRGHELCSTFLGNARSLWPTQDT 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,317,788
Number of Sequences: 27780
Number of extensions: 219461
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)